Variant report

Variant	rs10835902
Chromosome Location	chr11:32427036-32427037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:32426900-32427050	HPAF	blood vessel:	n/a	n/a
2	CTCF	chr11:32426900-32427050	HEEpiC	esophagus:	n/a	n/a
3	RAD21	chr11:32426836-32427047	MCF-7	breast:	n/a	n/a
4	CTCF	chr11:32426849-32427078	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:32404951..32407417-chr11:32425366..32427411,2	K562	blood:
2	chr11:32426521..32428841-chr11:32446378..32448492,2	K562	blood:
3	chr11:32426055..32429120-chr11:32454398..32457565,3	K562	blood:

Variant related genes	Relation type
WT1	TF binding region
ENSG00000183242	Chromatin interaction
ENSG00000184937	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10767934	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10767935	0.92[ASN][1000 genomes]
rs10835894	0.87[ASN][1000 genomes]
rs10835896	0.88[ASN][1000 genomes]
rs10835897	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10835900	0.88[ASN][1000 genomes]
rs10835901	0.92[ASN][1000 genomes]
rs10835903	0.92[ASN][1000 genomes]
rs10835905	0.92[ASN][1000 genomes]
rs10835906	0.92[ASN][1000 genomes]
rs11031755	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11031757	0.88[ASN][1000 genomes]
rs11031760	0.87[ASN][1000 genomes]
rs11031761	0.88[ASN][1000 genomes]
rs11031762	0.88[ASN][1000 genomes]
rs11031763	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11031767	0.92[ASN][1000 genomes]
rs11031769	0.86[ASN][1000 genomes]
rs11031770	0.84[ASN][1000 genomes]
rs12365223	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12365511	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12574749	0.88[ASN][1000 genomes]
rs1569776	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16923242	0.92[ASN][1000 genomes]
rs3847589	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858440	0.92[ASN][1000 genomes]
rs3858441	0.92[ASN][1000 genomes]
rs3858442	0.92[ASN][1000 genomes]
rs3858443	0.84[ASN][1000 genomes]
rs3901671	0.92[ASN][1000 genomes]
rs3932463	0.92[ASN][1000 genomes]
rs4140414	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5030193	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5030203	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5030234	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5030241	0.92[ASN][1000 genomes]
rs5030268	0.90[ASN][1000 genomes]
rs5030270	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5030277	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs5030280	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs5030281	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs5030310	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs59666608	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7116169	0.88[ASN][1000 genomes]
rs7125543	0.92[ASN][1000 genomes]
rs7125816	0.92[ASN][1000 genomes]
rs7926521	0.88[ASN][1000 genomes]
rs7926620	0.88[ASN][1000 genomes]
rs7938016	0.92[ASN][1000 genomes]
rs7946388	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1038188	chr11:32410305-32449799	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32420400-32429600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:32422200-32433400	Weak transcription	Ovary	ovary
3	chr11:32424200-32433400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr11:32426000-32427800	Strong transcription	K562	blood
5	chr11:32426400-32434400	Weak transcription	Fetal Kidney	kidney
6	chr11:32427000-32427400	Weak transcription	Dnd41	blood

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