Variant report

Variant	rs11031761
Chromosome Location	chr11:32407208-32407209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:32407039..32411612-chr11:32452457..32458118,5	K562	blood:
2	chr11:32407201..32409874-chr11:32413838..32416426,2	K562	blood:
3	chr11:32406459..32408539-chr11:32455882..32458118,2	K562	blood:
4	chr11:32404951..32407417-chr11:32425366..32427411,2	K562	blood:
5	chr11:32404442..32407230-chr11:32442115..32444001,2	K562	blood:
6	chr11:32404607..32407766-chr11:32605080..32608022,4	K562	blood:
7	chr11:32405231..32409162-chr11:32605421..32608022,3	K562	blood:

Variant related genes	Relation type
ENSG00000184937	Chromatin interaction
ENSG00000149100	Chromatin interaction
ENSG00000183242	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10767933	0.81[ASN][1000 genomes]
rs10767934	0.92[ASN][1000 genomes]
rs10767935	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10835893	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10835894	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10835896	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835897	0.95[ASN][1000 genomes]
rs10835900	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10835901	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10835902	0.88[ASN][1000 genomes]
rs10835903	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10835905	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10835906	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11031748	0.91[EUR][1000 genomes]
rs11031755	0.83[ASN][1000 genomes]
rs11031757	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031760	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11031762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031763	0.93[ASN][1000 genomes]
rs11031767	0.94[ASN][1000 genomes]
rs11031769	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11031770	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12224661	0.83[EUR][1000 genomes]
rs12365223	0.83[ASN][1000 genomes]
rs12365511	0.95[ASN][1000 genomes]
rs12574749	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1569776	0.91[ASN][1000 genomes]
rs16923242	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1799937	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2418902	0.88[EUR][1000 genomes]
rs3847589	0.88[ASN][1000 genomes]
rs3858437	0.88[EUR][1000 genomes]
rs3858440	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3858441	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3858442	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3858443	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3901671	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3932463	0.94[ASN][1000 genomes]
rs4140414	0.92[ASN][1000 genomes]
rs5030234	0.88[ASN][1000 genomes]
rs5030241	0.94[ASN][1000 genomes]
rs5030268	0.85[ASN][1000 genomes]
rs5030270	0.85[ASN][1000 genomes]
rs5030277	0.93[ASN][1000 genomes]
rs5030280	0.93[ASN][1000 genomes]
rs5030281	0.93[ASN][1000 genomes]
rs5030310	0.95[ASN][1000 genomes]
rs5030317	0.81[ASN][1000 genomes]
rs5030320	0.81[ASN][1000 genomes]
rs56911719	0.82[ASN][1000 genomes]
rs58222320	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58736369	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59666608	0.83[ASN][1000 genomes]
rs61889189	0.85[EUR][1000 genomes]
rs61889206	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6484574	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6484575	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6484576	0.81[ASN][1000 genomes]
rs7101933	0.84[EUR][1000 genomes]
rs7105538	0.88[EUR][1000 genomes]
rs7105549	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7108339	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7116169	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125543	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7125816	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7925851	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7926521	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926620	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938016	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7939496	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7943119	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7946388	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951745	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32396400-32407800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:32403200-32411800	Weak transcription	Spleen	Spleen
3	chr11:32404000-32411800	Weak transcription	Right Ventricle	heart
4	chr11:32404400-32407800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:32405000-32409400	Strong transcription	Fetal Kidney	kidney
6	chr11:32405600-32408000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:32406000-32407400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr11:32406000-32412800	Genic enhancers	Dnd41	blood
9	chr11:32406200-32407800	Enhancers	Fetal Heart	heart
10	chr11:32406600-32411400	Weak transcription	Ovary	ovary
11	chr11:32407000-32407400	Weak transcription	K562	blood
12	chr11:32407200-32407800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:32407200-32408000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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