Variant report

Variant	rs58222320
Chromosome Location	chr11:32388682-32388683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10767935	0.81[EUR][1000 genomes]
rs10835892	0.92[ASN][1000 genomes]
rs10835894	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10835896	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10835900	0.81[EUR][1000 genomes]
rs10835901	0.81[EUR][1000 genomes]
rs10835903	0.81[EUR][1000 genomes]
rs10835905	0.81[EUR][1000 genomes]
rs10835906	0.81[EUR][1000 genomes]
rs11031739	0.81[ASN][1000 genomes]
rs11031741	0.84[ASN][1000 genomes]
rs11031744	0.89[ASN][1000 genomes]
rs11031745	0.89[ASN][1000 genomes]
rs11031746	0.89[ASN][1000 genomes]
rs11031747	0.85[ASN][1000 genomes]
rs11031748	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11031749	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11031755	0.86[ASN][1000 genomes]
rs11031757	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11031760	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11031761	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11031762	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11031769	0.81[EUR][1000 genomes]
rs12224661	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12365223	0.86[ASN][1000 genomes]
rs12574749	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16923171	0.87[ASN][1000 genomes]
rs16923174	0.87[ASN][1000 genomes]
rs16923242	0.81[EUR][1000 genomes]
rs2418899	0.81[ASN][1000 genomes]
rs2418901	0.89[ASN][1000 genomes]
rs2418902	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2418903	0.89[ASN][1000 genomes]
rs2418904	0.89[ASN][1000 genomes]
rs2418905	0.89[ASN][1000 genomes]
rs2418906	0.89[ASN][1000 genomes]
rs2418907	0.89[ASN][1000 genomes]
rs2418908	0.89[ASN][1000 genomes]
rs3858434	0.89[ASN][1000 genomes]
rs3858435	0.87[ASN][1000 genomes]
rs3858436	0.89[ASN][1000 genomes]
rs3858437	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3858438	0.87[ASN][1000 genomes]
rs3858439	0.90[ASN][1000 genomes]
rs3858440	0.81[EUR][1000 genomes]
rs3858441	0.81[EUR][1000 genomes]
rs3858443	0.81[EUR][1000 genomes]
rs3901671	0.81[EUR][1000 genomes]
rs56911719	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58736369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59666608	0.86[ASN][1000 genomes]
rs61889189	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61889206	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6484574	0.86[EUR][1000 genomes]
rs7101933	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7105538	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7105549	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7108339	0.81[EUR][1000 genomes]
rs7116169	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7125543	0.81[EUR][1000 genomes]
rs7125816	0.81[EUR][1000 genomes]
rs7925851	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7926521	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7926620	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7938016	0.81[EUR][1000 genomes]
rs7939496	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7943119	0.92[ASN][1000 genomes]
rs7946388	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7951745	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3403524	chr11:32387376-32392574	Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3326488	chr11:32387576-32392074	Enhancers Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
3	esv3375305	chr11:32388061-32395369	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3485561	chr11:32388235-32392721	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3405251	chr11:32388401-32391749	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3422631	chr11:32388526-32391774	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32388000-32388800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:32388200-32388800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:32388200-32388800	Enhancers	HepG2	liver

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