Variant report

Variant	rs7938016
Chromosome Location	chr11:32428978-32428979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32426055..32429120-chr11:32454398..32457565,3	K562	blood:

Variant related genes	Relation type
ENSG00000183242	Chromatin interaction
ENSG00000184937	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10767934	0.95[ASN][1000 genomes]
rs10767935	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835894	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10835896	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10835897	0.92[ASN][1000 genomes]
rs10835900	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10835901	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835902	0.92[ASN][1000 genomes]
rs10835903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835904	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs10835905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11031755	0.81[JPT][hapmap]
rs11031757	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11031760	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11031761	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11031762	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11031763	0.93[ASN][1000 genomes]
rs11031767	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11031769	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11031770	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11824258	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12290546	0.81[ASN][1000 genomes]
rs12365511	0.91[ASN][1000 genomes]
rs12574749	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[ASN][1000 genomes]
rs1569776	0.94[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs16923242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1799937	0.82[CEU][hapmap];0.84[CHB][hapmap];0.83[CHD][hapmap];0.82[MEX][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2234587	0.89[CEU][hapmap];0.84[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2295081	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2295082	0.89[CEU][hapmap];0.84[CHB][hapmap];0.83[CHD][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2418910	0.83[CHB][hapmap]
rs3818055	0.84[CHB][hapmap];0.83[CHD][hapmap];0.87[MEX][hapmap]
rs3847589	0.94[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs3858440	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858441	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858443	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3858445	0.84[CEU][hapmap];0.80[CHD][hapmap];0.87[MEX][hapmap];0.82[EUR][1000 genomes]
rs3901671	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3932463	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4140414	0.95[ASN][1000 genomes]
rs5030201	0.88[CEU][hapmap];0.84[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs5030203	0.85[CHB][hapmap]
rs5030207	0.89[CEU][hapmap];0.84[CHB][hapmap];0.83[CHD][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs5030218	0.89[CEU][hapmap];0.83[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs5030234	0.94[CHB][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs5030241	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs5030268	0.87[ASN][1000 genomes]
rs5030270	0.88[ASN][1000 genomes]
rs5030277	0.94[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs5030280	0.94[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs5030281	0.94[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs5030310	0.94[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs5030317	0.84[CHB][hapmap]
rs5030320	0.84[CHB][hapmap];0.83[CHD][hapmap]
rs58222320	0.81[EUR][1000 genomes]
rs58736369	0.81[EUR][1000 genomes]
rs61889206	0.87[AMR][1000 genomes]
rs6484574	0.84[AMR][1000 genomes]
rs6484576	0.83[CHB][hapmap]
rs6484577	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs7107082	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7108339	0.94[CEU][hapmap];0.82[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7116169	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7125543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125816	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7925851	0.82[CEU][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7926521	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7926620	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7939496	0.82[CEU][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7943119	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7946388	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7951745	0.82[CEU][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1038188	chr11:32410305-32449799	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7938016	PAMR1	cis	parietal	SCAN
rs7938016	PRR5L	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32420400-32429600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:32422200-32433400	Weak transcription	Ovary	ovary
3	chr11:32424200-32433400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr11:32426400-32434400	Weak transcription	Fetal Kidney	kidney
5	chr11:32427800-32435000	Weak transcription	K562	blood
6	chr11:32428800-32429600	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links