Variant report

Variant	rs10835904
Chromosome Location	chr11:32430601-32430602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32422364..32424970-chr11:32429339..32430871,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10767933	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10767935	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs10835893	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10835896	0.84[CHB][hapmap]
rs10835901	0.81[ASN][1000 genomes]
rs10835903	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs10835905	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs10835906	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs10835907	0.84[CHB][hapmap]
rs11031754	0.90[JPT][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11031762	0.84[CHB][hapmap]
rs11031767	0.90[CEU][hapmap];0.83[CHB][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11824258	0.87[ASN][1000 genomes]
rs12290546	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574749	0.84[CHB][hapmap]
rs16754	0.94[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs16923242	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs1799937	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2234587	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2295081	0.97[ASN][1000 genomes]
rs2295082	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3818055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3858440	0.81[ASN][1000 genomes]
rs3858441	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs3858442	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs3858445	0.94[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs3901671	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs3932463	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5030201	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs5030203	0.87[JPT][hapmap]
rs5030207	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs5030218	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs5030241	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5030317	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5030320	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6484573	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6484574	0.94[ASN][1000 genomes]
rs6484575	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6484576	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6484577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107082	0.97[ASN][1000 genomes]
rs7115190	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7116462	0.84[ASN][1000 genomes]
rs7125543	0.81[ASN][1000 genomes]
rs7125816	0.80[ASN][1000 genomes]
rs7938016	0.84[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1038188	chr11:32410305-32449799	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32422200-32433400	Weak transcription	Ovary	ovary
2	chr11:32424200-32433400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:32426400-32434400	Weak transcription	Fetal Kidney	kidney
4	chr11:32427800-32435000	Weak transcription	K562	blood

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