Variant report

Variant	rs6484575
Chromosome Location	chr11:32406036-32406037
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:32404302..32406128-chr11:32451731..32454627,2	K562	blood:
2	chr11:32404951..32407417-chr11:32425366..32427411,2	K562	blood:
3	chr11:32404442..32407230-chr11:32442115..32444001,2	K562	blood:
4	chr11:32404607..32407766-chr11:32605080..32608022,4	K562	blood:
5	chr11:32405231..32409162-chr11:32605421..32608022,3	K562	blood:

Variant related genes	Relation type
ENSG00000184937	Chromatin interaction
ENSG00000149100	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10767933	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835893	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835894	0.83[ASN][1000 genomes]
rs10835896	0.81[ASN][1000 genomes]
rs10835904	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11031754	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11031757	0.81[ASN][1000 genomes]
rs11031760	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11031761	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11031762	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11824258	0.83[ASN][1000 genomes]
rs12290546	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12574749	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16754	0.92[ASN][1000 genomes]
rs1799937	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2234587	0.92[ASN][1000 genomes]
rs2295081	0.92[ASN][1000 genomes]
rs2295082	0.92[ASN][1000 genomes]
rs3818055	0.92[ASN][1000 genomes]
rs3858445	0.84[ASN][1000 genomes]
rs5030201	0.92[ASN][1000 genomes]
rs5030207	0.92[ASN][1000 genomes]
rs5030218	0.92[ASN][1000 genomes]
rs5030317	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5030320	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6484573	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6484574	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484576	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484577	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7107082	0.92[ASN][1000 genomes]
rs7115190	0.87[ASN][1000 genomes]
rs7116169	0.81[ASN][1000 genomes]
rs7116462	0.80[ASN][1000 genomes]
rs7926521	0.81[ASN][1000 genomes]
rs7926620	0.81[ASN][1000 genomes]
rs7943119	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7946388	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32396400-32407800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:32403200-32411800	Weak transcription	Spleen	Spleen
3	chr11:32404000-32411800	Weak transcription	Right Ventricle	heart
4	chr11:32404400-32407800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:32405000-32406200	Weak transcription	Fetal Heart	heart
6	chr11:32405000-32409400	Strong transcription	Fetal Kidney	kidney
7	chr11:32405600-32406800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:32405600-32408000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:32405800-32406600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:32406000-32406600	Strong transcription	Ovary	ovary
11	chr11:32406000-32407000	Strong transcription	K562	blood
12	chr11:32406000-32407400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr11:32406000-32412800	Genic enhancers	Dnd41	blood

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