Variant report
| Variant | rs6484573 |
|---|---|
| Chromosome Location | chr11:32392251-32392252 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:32392237..32394630-chr11:32604009..32606559,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000149100 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10767933 | 0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10835893 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10835904 | 0.86[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11031754 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12290546 | 0.81[ASN][1000 genomes] |
| rs12574749 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1799937 | 0.82[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3818055 | 0.82[AMR][1000 genomes] |
| rs5030317 | 0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs5030320 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6484574 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6484575 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6484576 | 0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6484577 | 0.84[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7115190 | 0.82[AMR][1000 genomes] |
| rs7925851 | 0.82[ASN][1000 genomes] |
| rs7939496 | 0.82[ASN][1000 genomes] |
| rs7943119 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7951745 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3403524 | chr11:32387376-32392574 | Weak transcription Enhancers Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv3375305 | chr11:32388061-32395369 | Enhancers Weak transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv3485561 | chr11:32388235-32392721 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
