Variant report

Variant	rs7939496
Chromosome Location	chr11:32396585-32396586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:32394227..32397866-chr11:32398063..32404136,7	K562	blood:
2	chr11:32394931..32398085-chr11:32400583..32404454,5	K562	blood:
3	chr11:32395890..32398375-chr11:32606788..32608603,2	K562	blood:
4	chr11:32396138..32399032-chr11:32408436..32411201,2	K562	blood:
5	chr11:32396013..32398929-chr11:32913872..32916458,2	K562	blood:

Variant related genes	Relation type
ENSG00000060749	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10767934	0.81[ASN][1000 genomes]
rs10767935	0.82[CEU][hapmap];0.92[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10835892	0.84[ASN][1000 genomes]
rs10835894	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10835896	1.00[CEU][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10835897	0.83[ASN][1000 genomes]
rs10835900	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10835901	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10835903	0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10835905	0.82[CEU][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10835906	0.82[CEU][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10835907	0.82[CEU][hapmap];0.90[JPT][hapmap]
rs11031744	0.81[ASN][1000 genomes]
rs11031745	0.81[ASN][1000 genomes]
rs11031746	0.81[ASN][1000 genomes]
rs11031748	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11031754	0.84[CEU][hapmap];0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs11031755	0.95[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs11031757	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11031760	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11031761	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11031762	1.00[CEU][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11031763	0.82[ASN][1000 genomes]
rs11031767	0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11031769	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11031770	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12224661	0.84[EUR][1000 genomes]
rs12365223	0.95[ASN][1000 genomes]
rs12365511	0.84[ASN][1000 genomes]
rs12574749	0.89[CEU][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1569776	0.88[CHD][hapmap];0.81[JPT][hapmap]
rs16923242	0.82[CEU][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1799937	0.88[CEU][hapmap];0.87[MEX][hapmap];0.85[AMR][1000 genomes]
rs2234587	0.83[CEU][hapmap]
rs2295082	0.83[CEU][hapmap]
rs2418901	0.81[ASN][1000 genomes]
rs2418902	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2418903	0.81[ASN][1000 genomes]
rs2418904	0.81[ASN][1000 genomes]
rs2418905	0.81[ASN][1000 genomes]
rs2418906	0.81[ASN][1000 genomes]
rs2418907	0.81[ASN][1000 genomes]
rs2418908	0.81[ASN][1000 genomes]
rs3847589	0.81[JPT][hapmap]
rs3858434	0.81[ASN][1000 genomes]
rs3858436	0.81[ASN][1000 genomes]
rs3858437	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3858439	0.82[ASN][1000 genomes]
rs3858440	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3858441	0.82[CEU][hapmap];0.92[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3858442	0.82[CEU][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3858443	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3901671	0.82[CEU][hapmap];0.92[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3932463	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4140414	0.81[ASN][1000 genomes]
rs5030201	0.82[CEU][hapmap]
rs5030207	0.83[CEU][hapmap]
rs5030218	0.83[CEU][hapmap]
rs5030241	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs5030277	0.85[CHD][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs5030280	0.88[CHD][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs5030281	0.88[CHD][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs5030310	0.87[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs5030317	0.82[MEX][hapmap]
rs5030320	0.84[CEU][hapmap];0.91[MEX][hapmap]
rs56911719	0.92[ASN][1000 genomes]
rs58222320	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58736369	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59666608	0.95[ASN][1000 genomes]
rs61889189	0.86[EUR][1000 genomes]
rs61889206	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6484573	0.82[ASN][1000 genomes]
rs6484574	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6484576	0.84[CEU][hapmap]
rs7101933	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7105538	0.89[EUR][1000 genomes]
rs7105549	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7108339	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7116169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7125543	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7125816	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7925851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7926620	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7938016	0.82[CEU][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7943119	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7951745	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7939496	PRR5L	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32395800-32396800	Enhancers	Dnd41	blood
2	chr11:32396000-32396600	Enhancers	Primary hematopoietic stem cells	blood
3	chr11:32396000-32396600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:32396400-32407800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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