Variant report

Variant	rs7105538
Chromosome Location	chr11:32387919-32387920
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10767935	0.82[CEU][hapmap]
rs10835894	0.89[EUR][1000 genomes]
rs10835896	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10835905	0.82[CEU][hapmap]
rs10835906	0.82[CEU][hapmap]
rs10835907	0.82[CEU][hapmap]
rs11031748	0.91[EUR][1000 genomes]
rs11031754	0.84[CEU][hapmap]
rs11031755	0.85[CHB][hapmap]
rs11031757	0.89[EUR][1000 genomes]
rs11031760	0.88[EUR][1000 genomes]
rs11031761	0.88[EUR][1000 genomes]
rs11031762	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12224661	0.81[EUR][1000 genomes]
rs12574749	0.89[CEU][hapmap]
rs16923242	0.82[CEU][hapmap]
rs1799937	0.88[CEU][hapmap]
rs2234587	0.83[CEU][hapmap]
rs2295082	0.83[CEU][hapmap]
rs2418902	0.85[EUR][1000 genomes]
rs3858437	0.85[EUR][1000 genomes]
rs3858441	0.82[CEU][hapmap]
rs3858442	0.82[CEU][hapmap]
rs3901671	0.82[CEU][hapmap]
rs5030201	0.82[CEU][hapmap]
rs5030207	0.83[CEU][hapmap]
rs5030218	0.83[CEU][hapmap]
rs5030320	0.84[CEU][hapmap]
rs56911719	0.84[ASN][1000 genomes]
rs58222320	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58736369	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61889189	0.84[EUR][1000 genomes]
rs6484576	0.84[CEU][hapmap]
rs7101933	0.84[EUR][1000 genomes]
rs7105549	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7116169	0.89[EUR][1000 genomes]
rs7925851	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes]
rs7926521	0.89[EUR][1000 genomes]
rs7926620	0.89[EUR][1000 genomes]
rs7938016	0.82[CEU][hapmap]
rs7939496	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes]
rs7946388	0.89[EUR][1000 genomes]
rs7951745	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3403524	chr11:32387376-32392574	Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3326488	chr11:32387576-32392074	Enhancers Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
3	esv3416840	chr11:32387816-32388119	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7105538	PRR5L	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32387800-32388200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:32387800-32388600	Enhancers	Ovary	ovary

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