Variant report

Variant	rs10835907
Chromosome Location	chr11:32434180-32434181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32431985..32434925-chr11:32436480..32438156,2	K562	blood:
2	chr11:32431798..32437144-chr11:32439795..32446613,10	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10767935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10835896	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10835903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs10835904	0.84[CHB][hapmap]
rs10835905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10835906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs11031755	0.83[JPT][hapmap]
rs11031762	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11031767	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12574749	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1569776	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs16923242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs1799937	0.82[CEU][hapmap];0.84[CHB][hapmap]
rs2234587	0.90[CEU][hapmap];0.84[CHB][hapmap]
rs2295082	0.89[CEU][hapmap];0.84[CHB][hapmap]
rs3818055	0.84[CHB][hapmap]
rs3847589	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs3858441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3858442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3858445	0.84[CEU][hapmap]
rs3901671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5030201	0.90[CEU][hapmap];0.84[CHB][hapmap]
rs5030207	0.89[CEU][hapmap];0.84[CHB][hapmap]
rs5030218	0.90[CEU][hapmap];0.83[CHB][hapmap]
rs5030234	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs5030277	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs5030280	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs5030281	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs5030310	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs5030317	0.84[CHB][hapmap]
rs5030320	0.84[CHB][hapmap]
rs6484576	0.83[CHB][hapmap]
rs6484577	0.83[CHB][hapmap]
rs7108339	0.95[CEU][hapmap];0.84[JPT][hapmap]
rs7925851	0.85[CEU][hapmap];0.91[JPT][hapmap]
rs7938016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7939496	0.82[CEU][hapmap];0.90[JPT][hapmap]
rs7951745	0.84[CEU][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1038188	chr11:32410305-32449799	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32426400-32434400	Weak transcription	Fetal Kidney	kidney
2	chr11:32427800-32435000	Weak transcription	K562	blood
3	chr11:32433400-32434200	Active TSS	Ovary	ovary
4	chr11:32433400-32437200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr11:32434000-32442400	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links