Variant report

Variant	rs12365511
Chromosome Location	chr11:32400152-32400153
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32394227..32397866-chr11:32398063..32404136,7	K562	blood:
2	chr11:32399722..32401595-chr11:32443789..32446145,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10767934	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10767935	0.91[ASN][1000 genomes]
rs10835892	0.85[EUR][1000 genomes]
rs10835894	0.94[ASN][1000 genomes]
rs10835896	0.95[ASN][1000 genomes]
rs10835897	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10835900	0.86[ASN][1000 genomes]
rs10835901	0.91[ASN][1000 genomes]
rs10835902	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10835903	0.91[ASN][1000 genomes]
rs10835905	0.91[ASN][1000 genomes]
rs10835906	0.91[ASN][1000 genomes]
rs11031744	0.85[EUR][1000 genomes]
rs11031745	0.82[EUR][1000 genomes]
rs11031746	0.85[EUR][1000 genomes]
rs11031747	0.82[EUR][1000 genomes]
rs11031755	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11031757	0.95[ASN][1000 genomes]
rs11031760	0.95[ASN][1000 genomes]
rs11031761	0.95[ASN][1000 genomes]
rs11031762	0.95[ASN][1000 genomes]
rs11031763	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11031767	0.90[ASN][1000 genomes]
rs11031769	0.84[ASN][1000 genomes]
rs11031770	0.83[ASN][1000 genomes]
rs12365223	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12574749	0.95[ASN][1000 genomes]
rs1569776	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16754	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16923242	0.91[ASN][1000 genomes]
rs3847589	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3858438	0.85[EUR][1000 genomes]
rs3858439	0.84[EUR][1000 genomes]
rs3858440	0.91[ASN][1000 genomes]
rs3858441	0.91[ASN][1000 genomes]
rs3858442	0.91[ASN][1000 genomes]
rs3858443	0.83[ASN][1000 genomes]
rs3901671	0.91[ASN][1000 genomes]
rs3932463	0.90[ASN][1000 genomes]
rs4140414	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5030193	0.81[AMR][1000 genomes]
rs5030203	0.84[AMR][1000 genomes]
rs5030234	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs5030241	0.90[ASN][1000 genomes]
rs5030268	0.89[ASN][1000 genomes]
rs5030270	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs5030277	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5030280	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5030281	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5030310	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59666608	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7116169	0.95[ASN][1000 genomes]
rs7125543	0.91[ASN][1000 genomes]
rs7125816	0.90[ASN][1000 genomes]
rs7925851	0.84[ASN][1000 genomes]
rs7926521	0.95[ASN][1000 genomes]
rs7926620	0.95[ASN][1000 genomes]
rs7938016	0.91[ASN][1000 genomes]
rs7939496	0.84[ASN][1000 genomes]
rs7943119	0.84[ASN][1000 genomes]
rs7946388	0.95[ASN][1000 genomes]
rs7951745	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32396400-32407800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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