Variant report

Variant	rs7943119
Chromosome Location	chr11:32397206-32397207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:32394227..32397866-chr11:32398063..32404136,7	K562	blood:
2	chr11:32394931..32398085-chr11:32400583..32404454,5	K562	blood:
3	chr11:32395890..32398375-chr11:32606788..32608603,2	K562	blood:
4	chr11:32396138..32399032-chr11:32408436..32411201,2	K562	blood:
5	chr11:32396013..32398929-chr11:32913872..32916458,2	K562	blood:

Variant related genes	Relation type
ENSG00000060749	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10767933	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10767934	0.81[ASN][1000 genomes]
rs10767935	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10835892	0.84[ASN][1000 genomes]
rs10835893	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10835894	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10835896	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10835897	0.83[ASN][1000 genomes]
rs10835900	0.84[AMR][1000 genomes]
rs10835901	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10835903	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10835905	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10835906	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11031744	0.81[ASN][1000 genomes]
rs11031745	0.81[ASN][1000 genomes]
rs11031746	0.81[ASN][1000 genomes]
rs11031748	0.83[ASN][1000 genomes]
rs11031754	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11031755	0.95[ASN][1000 genomes]
rs11031757	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11031760	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11031761	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11031762	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11031763	0.82[ASN][1000 genomes]
rs11031767	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11031769	0.81[AMR][1000 genomes]
rs11031770	0.81[AMR][1000 genomes]
rs12365223	0.95[ASN][1000 genomes]
rs12365511	0.84[ASN][1000 genomes]
rs12574749	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16923242	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2418901	0.81[ASN][1000 genomes]
rs2418902	0.81[ASN][1000 genomes]
rs2418903	0.81[ASN][1000 genomes]
rs2418904	0.81[ASN][1000 genomes]
rs2418905	0.81[ASN][1000 genomes]
rs2418906	0.81[ASN][1000 genomes]
rs2418907	0.81[ASN][1000 genomes]
rs2418908	0.81[ASN][1000 genomes]
rs3858434	0.81[ASN][1000 genomes]
rs3858436	0.81[ASN][1000 genomes]
rs3858437	0.81[ASN][1000 genomes]
rs3858439	0.82[ASN][1000 genomes]
rs3858440	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3858441	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3858442	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3858443	0.81[AMR][1000 genomes]
rs3901671	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3932463	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4140414	0.81[ASN][1000 genomes]
rs5030241	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs5030277	0.82[ASN][1000 genomes]
rs5030280	0.82[ASN][1000 genomes]
rs5030281	0.82[ASN][1000 genomes]
rs5030310	0.83[ASN][1000 genomes]
rs5030320	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56911719	0.92[ASN][1000 genomes]
rs58222320	0.92[ASN][1000 genomes]
rs58736369	0.92[ASN][1000 genomes]
rs59666608	0.95[ASN][1000 genomes]
rs61889206	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6484573	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6484574	0.82[AMR][1000 genomes]
rs6484575	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6484576	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7101933	0.82[ASN][1000 genomes]
rs7105549	0.91[ASN][1000 genomes]
rs7116169	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7125543	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7125816	0.83[ASN][1000 genomes]
rs7925851	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926521	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7926620	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7938016	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7939496	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946388	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7951745	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32396400-32407800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:32397200-32398000	Enhancers	Dnd41	blood

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