Variant report

Variant	rs10835901
Chromosome Location	chr11:32426953-32426954
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:32)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:32 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:32426840-32426990	AoAF	blood vessel:	n/a	n/a
2	CTCF	chr11:32426820-32426970	MCF-7	breast:	n/a	n/a
3	CTCF	chr11:32426918-32426954	GM13977	blood:	n/a	n/a
4	CTCF	chr11:32426880-32427030	HCPEpiC	choroid plexus:	n/a	n/a
5	CTCF	chr11:32426836-32426997	HepG2	liver:	n/a	n/a
6	CTCF	chr11:32426820-32426970	GM12869	blood:	n/a	n/a
7	CTCF	chr11:32426860-32427010	GM12870	blood:	n/a	n/a
8	CTCF	chr11:32426880-32427030	HBMEC	blood vessel:	n/a	n/a
9	CTCF	chr11:32426892-32426996	HepG2	liver:	n/a	n/a
10	CTCF	chr11:32426852-32426996	MCF-7	breast:	n/a	n/a
11	CTCF	chr11:32426840-32426990	AG10803	skin:	n/a	n/a
12	CTCF	chr11:32426880-32427030	HEEpiC	esophagus:	n/a	n/a
13	RAD21	chr11:32426911-32426996	Hela-S3	cervix:	n/a	n/a
14	CTCF	chr11:32426864-32426972	HUVEC	blood vessel:	n/a	n/a
15	CTCF	chr11:32426840-32426990	Caco-2	colon:	n/a	n/a
16	CTCF	chr11:32426840-32426990	HCPEpiC	choroid plexus:	n/a	n/a
17	RAD21	chr11:32426878-32426999	SK-N-SH_RA	brain:	n/a	n/a
18	CTCF	chr11:32426820-32426970	Hela-S3	cervix:	n/a	n/a
19	CTCF	chr11:32426900-32427050	HPAF	blood vessel:	n/a	n/a
20	CTCF	chr11:32426880-32427030	Hela-S3	cervix:	n/a	n/a
21	CTCF	chr11:32426900-32427050	HEEpiC	esophagus:	n/a	n/a
22	CTCF	chr11:32426898-32426973	K562	blood:	n/a	n/a
23	RAD21	chr11:32426768-32427030	HCT-116	colon:	n/a	n/a
24	CTCF	chr11:32426880-32427030	Caco-2	colon:	n/a	n/a
25	CTCF	chr11:32426820-32426970	HPF	lung:	n/a	n/a
26	CTCF	chr11:32426892-32426979	MCF-7	breast:	n/a	n/a
27	RAD21	chr11:32426836-32427047	MCF-7	breast:	n/a	n/a
28	CTCF	chr11:32426922-32426967	LNCaP	prostate:	n/a	n/a
29	RAD21	chr11:32426790-32427028	HepG2	liver:	n/a	n/a
30	CTCF	chr11:32426855-32427018	Hela-S3	cervix:	n/a	n/a
31	CTCF	chr11:32426849-32427078	K562	blood:	n/a	n/a
32	CTCF	chr11:32426840-32426990	HPAF	blood vessel:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:32404951..32407417-chr11:32425366..32427411,2	K562	blood:
2	chr11:32426521..32428841-chr11:32446378..32448492,2	K562	blood:
3	chr11:32426055..32429120-chr11:32454398..32457565,3	K562	blood:

No data

Variant related genes	Relation type
WT1	TF binding region
ENSG00000184937	Chromatin interaction
ENSG00000183242	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10767934	0.95[ASN][1000 genomes]
rs10767935	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835894	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10835896	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10835897	0.92[ASN][1000 genomes]
rs10835900	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10835902	0.92[ASN][1000 genomes]
rs10835903	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835904	0.81[ASN][1000 genomes]
rs10835905	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10835906	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031757	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11031760	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11031761	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11031762	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11031763	0.93[ASN][1000 genomes]
rs11031767	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11031769	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11031770	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11824258	0.88[EUR][1000 genomes]
rs12290546	0.81[ASN][1000 genomes]
rs12365511	0.91[ASN][1000 genomes]
rs12574749	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1569776	0.94[ASN][1000 genomes]
rs16923242	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1799937	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2234587	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2295081	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2295082	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3847589	0.92[ASN][1000 genomes]
rs3858440	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858442	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858443	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3858445	0.82[EUR][1000 genomes]
rs3901671	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3932463	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4140414	0.95[ASN][1000 genomes]
rs5030201	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs5030207	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs5030218	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs5030234	0.92[ASN][1000 genomes]
rs5030241	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs5030268	0.87[ASN][1000 genomes]
rs5030270	0.88[ASN][1000 genomes]
rs5030277	0.93[ASN][1000 genomes]
rs5030280	0.93[ASN][1000 genomes]
rs5030281	0.93[ASN][1000 genomes]
rs5030310	0.92[ASN][1000 genomes]
rs58222320	0.81[EUR][1000 genomes]
rs58736369	0.81[EUR][1000 genomes]
rs61889206	0.89[AMR][1000 genomes]
rs6484574	0.86[AMR][1000 genomes]
rs6484577	0.81[ASN][1000 genomes]
rs7107082	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7108339	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7116169	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7125543	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125816	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7925851	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7926521	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7926620	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7938016	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939496	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7943119	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7946388	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7951745	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1038188	chr11:32410305-32449799	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32420400-32429600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:32422200-32433400	Weak transcription	Ovary	ovary
3	chr11:32423200-32427000	Enhancers	Dnd41	blood
4	chr11:32424200-32433400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr11:32426000-32427800	Strong transcription	K562	blood
6	chr11:32426400-32434400	Weak transcription	Fetal Kidney	kidney

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