Variant report

Variant	rs11031770
Chromosome Location	chr11:32429666-32429667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32422364..32424970-chr11:32429339..32430871,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10767934	0.87[ASN][1000 genomes]
rs10767935	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10835894	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10835896	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10835897	0.84[ASN][1000 genomes]
rs10835900	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10835901	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10835902	0.84[ASN][1000 genomes]
rs10835903	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10835905	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10835906	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11031757	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11031760	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11031761	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11031762	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11031763	0.85[ASN][1000 genomes]
rs11031767	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11031769	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11824258	0.86[EUR][1000 genomes]
rs12365511	0.83[ASN][1000 genomes]
rs12574749	0.87[ASN][1000 genomes]
rs1569776	0.86[ASN][1000 genomes]
rs16923242	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1799937	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2234587	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2295081	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2295082	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3847589	0.84[ASN][1000 genomes]
rs3858440	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3858441	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3858442	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3858443	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3858445	0.81[EUR][1000 genomes]
rs3901671	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3932463	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4140414	0.87[ASN][1000 genomes]
rs5030201	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5030207	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5030218	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5030234	0.84[ASN][1000 genomes]
rs5030241	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs5030268	0.91[ASN][1000 genomes]
rs5030270	0.92[ASN][1000 genomes]
rs5030277	0.85[ASN][1000 genomes]
rs5030280	0.85[ASN][1000 genomes]
rs5030281	0.85[ASN][1000 genomes]
rs5030310	0.84[ASN][1000 genomes]
rs61889206	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6484574	0.83[AMR][1000 genomes]
rs7107082	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7108339	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7116169	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7125543	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7125816	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7925851	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7926521	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7926620	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7938016	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7939496	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7943119	0.81[AMR][1000 genomes]
rs7946388	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7951745	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1038188	chr11:32410305-32449799	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32422200-32433400	Weak transcription	Ovary	ovary
2	chr11:32424200-32433400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:32426400-32434400	Weak transcription	Fetal Kidney	kidney
4	chr11:32427800-32435000	Weak transcription	K562	blood
5	chr11:32429600-32429800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:32429600-32430000	Weak transcription	Dnd41	blood

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