Variant report

Variant	rs12365223
Chromosome Location	chr11:32394450-32394451
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:32394227..32397866-chr11:32398063..32404136,7	K562	blood:
2	chr11:32394302..32396571-chr11:32451325..32454077,2	K562	blood:
3	chr11:32392237..32394630-chr11:32604009..32606559,2	K562	blood:

Variant related genes	Relation type
ENSG00000149100	Chromatin interaction
ENSG00000184937	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10767934	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10835892	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10835894	0.82[ASN][1000 genomes]
rs10835896	0.83[ASN][1000 genomes]
rs10835897	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10835902	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11031744	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11031745	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11031746	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11031747	0.82[EUR][1000 genomes]
rs11031755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031757	0.83[ASN][1000 genomes]
rs11031760	0.83[ASN][1000 genomes]
rs11031761	0.83[ASN][1000 genomes]
rs11031762	0.83[ASN][1000 genomes]
rs11031763	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12365511	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12574749	0.83[ASN][1000 genomes]
rs1569776	0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16754	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2418901	0.82[ASN][1000 genomes]
rs2418903	0.82[ASN][1000 genomes]
rs2418904	0.82[ASN][1000 genomes]
rs2418905	0.82[ASN][1000 genomes]
rs2418906	0.82[ASN][1000 genomes]
rs2418907	0.82[ASN][1000 genomes]
rs2418908	0.82[ASN][1000 genomes]
rs3847589	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3858434	0.82[ASN][1000 genomes]
rs3858435	0.80[ASN][1000 genomes]
rs3858436	0.82[ASN][1000 genomes]
rs3858438	0.85[EUR][1000 genomes]
rs3858439	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4140414	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs5030193	0.81[AMR][1000 genomes]
rs5030203	0.84[AMR][1000 genomes]
rs5030234	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs5030270	0.90[AMR][1000 genomes]
rs5030277	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5030280	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5030281	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5030310	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56911719	0.86[ASN][1000 genomes]
rs58222320	0.86[ASN][1000 genomes]
rs58736369	0.86[ASN][1000 genomes]
rs59666608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889206	0.84[ASN][1000 genomes]
rs7105549	0.86[ASN][1000 genomes]
rs7116169	0.83[ASN][1000 genomes]
rs7925851	0.95[ASN][1000 genomes]
rs7926521	0.83[ASN][1000 genomes]
rs7926620	0.83[ASN][1000 genomes]
rs7939496	0.95[ASN][1000 genomes]
rs7943119	0.95[ASN][1000 genomes]
rs7946388	0.83[ASN][1000 genomes]
rs7951745	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3375305	chr11:32388061-32395369	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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