Variant report

Variant	rs5030203
Chromosome Location	chr11:32438684-32438685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10767934	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10835897	0.81[AMR][1000 genomes]
rs10835902	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10835903	0.82[CEU][hapmap]
rs10835904	0.87[JPT][hapmap]
rs11031755	0.84[AMR][1000 genomes]
rs11031763	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12365223	0.84[AMR][1000 genomes]
rs12365511	0.84[AMR][1000 genomes]
rs1569776	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16754	0.95[JPT][hapmap]
rs16923242	0.84[CEU][hapmap]
rs1799937	0.86[JPT][hapmap]
rs2234587	0.87[JPT][hapmap]
rs2295082	0.86[JPT][hapmap]
rs3818055	0.86[JPT][hapmap]
rs3847589	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.81[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3858442	0.84[CEU][hapmap];0.81[CHB][hapmap]
rs3858445	0.82[JPT][hapmap]
rs4140414	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5030193	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5030201	0.87[JPT][hapmap]
rs5030207	0.86[JPT][hapmap]
rs5030218	0.82[JPT][hapmap]
rs5030234	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5030270	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs5030277	0.81[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs5030280	0.81[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs5030281	0.81[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs5030310	0.81[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes]
rs5030317	0.86[JPT][hapmap]
rs5030320	0.86[JPT][hapmap]
rs59666608	0.84[AMR][1000 genomes]
rs6484576	0.87[JPT][hapmap]
rs6484577	0.87[JPT][hapmap]
rs7938016	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1038188	chr11:32410305-32449799	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1044547	chr11:32435753-32465233	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32434000-32442400	Weak transcription	Right Ventricle	heart
2	chr11:32436400-32441800	Enhancers	Dnd41	blood
3	chr11:32436600-32442200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:32436600-32442200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:32437200-32438800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr11:32437800-32439200	Enhancers	Fetal Thymus	thymus
7	chr11:32437800-32440200	Strong transcription	K562	blood
8	chr11:32437800-32440800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr11:32438000-32438800	Strong transcription	Fetal Kidney	kidney
10	chr11:32438400-32438800	Strong transcription	Ovary	ovary
11	chr11:32438400-32442200	Weak transcription	Left Ventricle	heart

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