Variant report

Variant	rs11031739
Chromosome Location	chr11:32376894-32376895
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32372034..32374687-chr11:32375500..32377075,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10835892	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11031741	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11031744	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11031745	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11031746	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11031747	0.81[EUR][1000 genomes]
rs11031755	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs1569776	0.81[MEX][hapmap]
rs16923171	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16923174	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2418899	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2418901	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2418902	0.82[ASN][1000 genomes]
rs2418903	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2418904	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2418905	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2418906	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2418907	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2418908	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3858434	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3858435	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3858436	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3858437	0.82[ASN][1000 genomes]
rs3858438	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3858439	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5030277	0.92[CEU][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap]
rs5030280	0.92[CEU][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap]
rs5030281	0.92[CEU][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap]
rs5030310	0.92[CEU][hapmap];0.83[TSI][hapmap]
rs56911719	0.81[ASN][1000 genomes]
rs58222320	0.81[ASN][1000 genomes]
rs58736369	0.81[ASN][1000 genomes]
rs6484570	0.82[JPT][hapmap]
rs7105549	0.81[ASN][1000 genomes]
rs7925851	0.84[CHB][hapmap]
rs7939496	0.84[CHB][hapmap]
rs7951745	0.84[CHB][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11031739	CRYGA	trans	parietal	SCAN
rs11031739	PAMR1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32375400-32377000	Enhancers	Colon Smooth Muscle	Colon
2	chr11:32375600-32377000	Enhancers	Rectal Smooth Muscle	rectum
3	chr11:32375800-32387600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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