Variant report

Variant	rs11031781
Chromosome Location	chr11:32454262-32454263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:32)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:32 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr11:32454190-32454428	K562	blood:	n/a	n/a
2	TEAD4	chr11:32454015-32454813	K562	blood:	n/a	n/a
3	ZBTB7A	chr11:32454188-32454396	K562	blood:	n/a	n/a
4	SUZ12	chr11:32453725-32461544	NT2-D1	testis:	n/a	n/a
5	JUN	chr11:32453532-32456818	K562	blood:	n/a	chr11:32453717-32453725
6	IRF1	chr11:32454177-32455055	K562	blood:	n/a	chr11:32454888-32454901 chr11:32454886-32454900 chr11:32454887-32454901 chr11:32454885-32454902 chr11:32454887-32454900 chr11:32454685-32454697 chr11:32454886-32454900 chr11:32454888-32454899
7	POLR2A	chr11:32453940-32456452	K562	blood:	n/a	n/a
8	USF1	chr11:32454138-32454437	K562	blood:	n/a	n/a
9	TBL1XR1	chr11:32454202-32454372	K562	blood:	n/a	n/a
10	IRF1	chr11:32454204-32455476	K562	blood:	n/a	chr11:32454888-32454901 chr11:32454886-32454900 chr11:32455294-32455308 chr11:32454887-32454901 chr11:32454885-32454902 chr11:32454887-32454900 chr11:32454685-32454697 chr11:32454886-32454900 chr11:32454888-32454899
11	POLR2A	chr11:32454197-32455115	K562	blood:	n/a	n/a
12	EP300	chr11:32454141-32454863	K562	blood:	n/a	n/a
13	RCOR1	chr11:32454151-32456441	K562	blood:	n/a	n/a
14	TAL1	chr11:32454242-32454481	K562	blood:	n/a	n/a
15	MAX	chr11:32454143-32458628	NB4	blood:	n/a	chr11:32457467-32457477
16	JUND	chr11:32454141-32456484	K562	blood:	n/a	n/a
17	POLR2A	chr11:32453980-32457577	K562	blood:	n/a	n/a
18	SUZ12	chr11:32453771-32458890	H1-hESC	embryonic stem cell:	n/a	n/a
19	POLR2A	chr11:32454161-32457678	K562	blood:	n/a	n/a
20	MAX	chr11:32454165-32454963	K562	blood:	n/a	n/a
21	TBP	chr11:32453973-32457616	K562	blood:	n/a	n/a
22	POLR2A	chr11:32454208-32457616	K562	blood:	n/a	n/a
23	POLR2A	chr11:32453512-32457942	NB4	blood:	n/a	n/a
24	BHLHE40	chr11:32454126-32454775	K562	blood:	n/a	n/a
25	MYC	chr11:32454126-32457534	K562	blood:	n/a	chr11:32457467-32457477
26	POLR2A	chr11:32453842-32457744	K562	blood:	n/a	n/a
27	MAX	chr11:32454168-32454520	K562	blood:	n/a	n/a
28	POLR2A	chr11:32453286-32457646	K562	blood:	n/a	n/a
29	CHD2	chr11:32454126-32454460	K562	blood:	n/a	n/a
30	MAZ	chr11:32454135-32456454	K562	blood:	n/a	n/a
31	MYC	chr11:32454129-32454884	K562	blood:	n/a	n/a
32	UBTF	chr11:32454244-32457504	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:32454216-32454266	HPAEpiC	pulmonary alveolar:	n/a
2	chr11:32454216-32454266	HCF	heart:	n/a
3	chr11:32454216-32454266	PrEC	prostate:	n/a
4	chr11:32454216-32454266	AG04450	lung:	fetal
5	chr11:32454216-32454266	HNPCEpiC	eye:	n/a
6	chr11:32454216-32454266	H1-hESC	embryonic stem cell:	embryo
7	chr11:32454216-32454266	GM06990	blood:	n/a
8	chr11:32454216-32454266	HL-60	blood:	n/a
9	chr11:32454216-32454266	GM12891	blood:	n/a
10	chr11:32454216-32454266	AG09309	skin:	n/a
11	chr11:32454216-32454266	Hepatocyte	liver:	n/a
12	chr11:32454216-32454266	HAEpiC	amniotic membrane:	n/a
13	chr11:32454216-32454266	GM12892	blood:	n/a
14	chr11:32454216-32454266	K562	blood:	n/a
15	chr11:32454216-32454266	GM19239	blood:	n/a
16	chr11:32454216-32454266	NHBE	bronchial:	n/a
17	chr11:32454216-32454266	HepG2	liver:	n/a
18	chr11:32454216-32454266	HEK293	kidney:	embryo
19	chr11:32454216-32454266	Jurkat	blood:	n/a
20	chr11:32454216-32454266	NB4	blood:	n/a
21	chr11:32454216-32454266	MCF10A-Er-Src	breast:	n/a
22	chr11:32454216-32454266	HMEC	breast:	n/a
23	chr11:32454216-32454266	AG09319	gingival:	n/a
24	chr11:32454216-32454266	RPTEC	kidney:	n/a
25	chr11:32454216-32454266	SK-N-MC	brain:	n/a
26	chr11:32454216-32454266	HCM	heart:	n/a
27	chr11:32454216-32454266	Caco-2	colon:	n/a
28	chr11:32454216-32454266	NHDF-neo	bronchial:	n/a
29	chr11:32454216-32454266	SK-N-SH	brain:	n/a
30	chr11:32454216-32454266	IMR90	lung:	fetal
31	chr11:32454216-32454266	AoSMC	blood vessel:	n/a
32	chr11:32454216-32454266	Hela-S3	cervix:	n/a
33	chr11:32454216-32454266	AG10803	skin:	n/a
34	chr11:32454216-32454266	GM12878	blood:	n/a
35	chr11:32454216-32454266	HUVEC	blood vessel:	n/a
36	chr11:32454216-32454266	MCF-7	breast:	n/a
37	chr11:32454216-32454266	NT2-D1	testis:	n/a
38	chr11:32454216-32454266	T-47D	breast:	n/a
39	chr11:32454216-32454266	SK-N-SH_RA	brain:	n/a
40	chr11:32454216-32454266	NH-A	brain:	n/a
41	chr11:32454216-32454266	LNCaP	prostate:	n/a
42	chr11:32454216-32454266	HCPEpiC	choroid plexus:	n/a
43	chr11:32454216-32454266	BE2_C	brain:	n/a
44	chr11:32454216-32454266	HEEpiC	esophagus:	n/a
45	chr11:32454216-32454266	HRE	kidney:	n/a
46	chr11:32454216-32454266	HIPEpiC	eye:	n/a
47	chr11:32454216-32454266	A549	lung:	n/a
48	chr11:32454216-32454266	AG04449	skin:	fetal
49	chr11:32454216-32454266	ECC-1	luminal epithelium:	n/a
50	chr11:32454216-32454266	SAEC	small airway:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32453512..32456485-chr11:32618384..32621260,2	K562	blood:

No data

Variant related genes	Relation type
WT1-AS	TF binding region
WT1	TF binding region
WT1	CpG island
WT1-AS	CpG island

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11031779	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11031780	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293603	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1799933	0.92[YRI][hapmap];0.90[AFR][1000 genomes]
rs2234582	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4258351	0.86[ASN][1000 genomes]
rs4986811	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs5030157	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs5030166	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs5030172	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72893517	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7936152	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1044547	chr11:32435753-32465233	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2753303	chr11:32447324-32494924	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1051559	chr11:32447347-32465233	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11031781	WT1	cis	parietal	SCAN
rs11031781	WT1AS	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32448800-32454800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
2	chr11:32450200-32457400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr11:32452200-32454400	Active TSS	Fetal Kidney	kidney
4	chr11:32452800-32454400	Weak transcription	Pancreas	Pancrea
5	chr11:32452800-32454800	Weak transcription	Gastric	stomach
6	chr11:32453400-32459600	Active TSS	Right Atrium	heart
7	chr11:32453800-32455000	Flanking Active TSS	K562	blood
8	chr11:32454000-32454400	Bivalent Enhancer	Colon Smooth Muscle	Colon
9	chr11:32454200-32454400	Active TSS	Ovary	ovary
10	chr11:32454200-32454400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
11	chr11:32454200-32454600	Enhancers	Lung	lung
12	chr11:32454200-32454600	Bivalent Enhancer	Right Ventricle	heart
13	chr11:32454200-32454600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
14	chr11:32454200-32454800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:32454200-32454800	Bivalent/Poised TSS	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links