Variant report

Variant	rs12293603
Chromosome Location	chr11:32446701-32446702
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11031779	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11031780	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11031781	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1799933	0.89[ASN][1000 genomes]
rs2234582	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4986811	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5030157	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5030166	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5030172	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5030185	0.89[ASN][1000 genomes]
rs72893517	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7936152	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1038188	chr11:32410305-32449799	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1044547	chr11:32435753-32465233	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32438800-32447800	Weak transcription	Ovary	ovary
2	chr11:32440800-32448400	Enhancers	Primary hematopoietic stem cells	blood
3	chr11:32443400-32447800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:32443600-32447400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:32444600-32447200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr11:32445400-32447800	Enhancers	Dnd41	blood
7	chr11:32446400-32447400	Weak transcription	K562	blood
8	chr11:32446600-32447600	Genic enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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