Variant report

Variant	rs11032057
Chromosome Location	chr11:32931391-32931392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:32911547..32917607-chr11:32930395..32938117,12	K562	blood:
2	chr11:32919542..32926976-chr11:32927671..32932534,9	K562	blood:
3	chr11:32930825..32933469-chr11:32935267..32937241,3	K562	blood:
4	chr11:32913437..32915867-chr11:32930703..32933783,3	MCF-7	breast:
5	chr11:32911413..32915588-chr11:32929395..32934017,7	K562	blood:

Variant related genes	Relation type
ENSG00000060749	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11032054	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11032059	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11032067	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs11032068	0.84[AFR][1000 genomes]
rs12269925	0.84[AFR][1000 genomes]
rs12270033	0.84[AFR][1000 genomes]
rs12280829	0.81[AFR][1000 genomes]
rs12287776	0.83[AFR][1000 genomes]
rs12288319	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12290810	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs12295245	0.87[AFR][1000 genomes]
rs16923664	0.97[AFR][1000 genomes]
rs73474594	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2757434	chr11:32792784-32958609	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	nsv897190	chr11:32801921-32951836	Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32916000-32953200	Weak transcription	Pancreas	Pancrea
2	chr11:32916200-32932400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:32916200-32935200	Weak transcription	Aorta	Aorta
4	chr11:32916200-32953200	Weak transcription	Right Ventricle	heart
5	chr11:32916400-32940000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:32916400-32952800	Weak transcription	Fetal Intestine Small	intestine
7	chr11:32916400-32953200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr11:32916400-32953400	Weak transcription	NHLF	lung
9	chr11:32916400-32953600	Weak transcription	NHDF-Ad	bronchial
10	chr11:32916600-32940600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr11:32917000-32936000	Weak transcription	Thymus	Thymus
12	chr11:32917000-32952800	Weak transcription	Primary B cells from cord blood	blood
13	chr11:32917400-32951000	Weak transcription	HSMM	muscle
14	chr11:32917400-32953000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:32917600-32952800	Weak transcription	Fetal Stomach	stomach
16	chr11:32918000-32953200	Weak transcription	Fetal Brain Female	brain
17	chr11:32918600-32953600	Weak transcription	Fetal Brain Male	brain
18	chr11:32918800-32934600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:32919600-32953000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr11:32921200-32952800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:32921200-32953200	Weak transcription	Primary T cells from cord blood	blood
22	chr11:32921400-32932600	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr11:32921400-32951000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:32921600-32939800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:32921600-32940800	Weak transcription	Small Intestine	intestine
26	chr11:32921800-32935000	Weak transcription	HepG2	liver
27	chr11:32921800-32940200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr11:32921800-32941400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:32921800-32950800	Weak transcription	Fetal Thymus	thymus
30	chr11:32922400-32933200	Weak transcription	Dnd41	blood
31	chr11:32922400-32935600	Weak transcription	A549	lung
32	chr11:32922600-32940800	Weak transcription	Fetal Intestine Large	intestine
33	chr11:32922600-32951200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr11:32922800-32952800	Weak transcription	Fetal Muscle Leg	muscle
35	chr11:32924000-32952800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:32924000-32952800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr11:32924000-32953200	Weak transcription	Left Ventricle	heart
38	chr11:32924200-32933400	Weak transcription	Hela-S3	cervix
39	chr11:32924400-32939400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr11:32924400-32939800	Weak transcription	HMEC	breast
41	chr11:32924400-32949600	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr11:32924400-32951200	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr11:32924600-32939600	Weak transcription	NHEK	skin
44	chr11:32925000-32939600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr11:32925200-32932400	Weak transcription	K562	blood
46	chr11:32925800-32933000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr11:32926400-32933000	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr11:32926400-32952800	Weak transcription	Ovary	ovary
49	chr11:32926600-32931800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr11:32926800-32951000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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