Variant report

Variant	rs11032067
Chromosome Location	chr11:32980386-32980387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32970671..32972775-chr11:32979842..32982658,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11032054	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs11032057	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs11032059	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs11032068	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12269925	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270033	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280829	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287776	0.89[AFR][1000 genomes]
rs12288319	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12290810	0.84[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs12295245	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16923664	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73474594	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73476624	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
5	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	nsv1040484	chr11:32951066-33093204	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1046198	chr11:32954100-33075142	Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	esv3358675	chr11:32960425-32981454	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv2762904	chr11:32969258-33586535	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
10	esv1851630	chr11:32972567-32986329	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32950400-32994400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr11:32954600-32990200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:32955400-32994200	Weak transcription	Gastric	stomach
4	chr11:32955400-32994400	Weak transcription	Esophagus	oesophagus
5	chr11:32955600-32987200	Weak transcription	Right Ventricle	heart
6	chr11:32955600-33000800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:32955600-33003800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:32956200-32994200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:32956800-32994200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:32958600-32980600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:32962400-32994400	Weak transcription	Fetal Heart	heart
12	chr11:32968200-32980600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr11:32968200-32981400	Weak transcription	Fetal Stomach	stomach
14	chr11:32968200-32984800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:32968200-32994200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:32968200-32998800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr11:32968200-33002000	Weak transcription	Brain Substantia Nigra	brain
18	chr11:32968200-33003000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:32968800-33002000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:32969600-32997000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr11:32970200-33001800	Weak transcription	Psoas Muscle	Psoas
22	chr11:32971800-32999600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:32973000-33003200	Weak transcription	NHLF	lung
24	chr11:32973200-33008600	Weak transcription	HSMMtube	muscle
25	chr11:32973600-32996000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr11:32974400-32996200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr11:32974600-32980800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr11:32974800-32984000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:32975000-32981800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr11:32975000-32982200	Strong transcription	Fetal Thymus	thymus
31	chr11:32975200-32981200	Strong transcription	Dnd41	blood
32	chr11:32975200-32988800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:32975200-33000600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr11:32975200-33000600	Strong transcription	Hela-S3	cervix
35	chr11:32975200-33001800	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr11:32975400-32981200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:32975400-32981800	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr11:32975400-32981800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr11:32975400-32981800	Strong transcription	Liver	Liver
40	chr11:32975400-32982000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr11:32975400-32982400	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr11:32975400-32984400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:32975400-32988000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:32975400-32989000	Strong transcription	Fetal Intestine Large	intestine
45	chr11:32975400-32992800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr11:32975400-33000600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr11:32975400-33000800	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr11:32975600-33000600	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr11:32975600-33002200	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr11:32975800-32985200	Weak transcription	Lung	lung

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