Variant report

Variant	rs11032360
Chromosome Location	chr11:33754945-33754946
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:33744704..33746248-chr11:33754825..33757634,2	K562	blood:
2	chr11:33741862..33744483-chr11:33754300..33758090,5	K562	blood:
3	chr11:33740386..33747828-chr11:33750725..33760528,16	K562	blood:
4	chr11:33740434..33748761-chr11:33752749..33759182,20	MCF-7	breast:
5	chr11:33730241..33733771-chr11:33754827..33758431,3	K562	blood:
6	chr11:33735999..33748184-chr11:33752891..33760863,45	MCF-7	breast:
7	chr11:33750894..33752859-chr11:33753319..33757778,3	K562	blood:
8	chr11:33752958..33755089-chr11:33756315..33759381,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000085063	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10742305	0.88[ASN][1000 genomes]
rs10768022	0.89[ASN][1000 genomes]
rs10768024	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10768027	0.95[ASN][1000 genomes]
rs10836104	0.88[ASN][1000 genomes]
rs10836105	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11600785	0.86[ASN][1000 genomes]
rs11826154	0.86[ASN][1000 genomes]
rs12272807	0.86[ASN][1000 genomes]
rs12295284	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1915894	0.85[ASN][1000 genomes]
rs2231454	0.99[ASN][1000 genomes]
rs3181270	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3181283	0.89[ASN][1000 genomes]
rs3794200	0.86[ASN][1000 genomes]
rs4517486	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57966527	0.96[ASN][1000 genomes]
rs7103573	0.86[ASN][1000 genomes]
rs7104220	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7108627	0.86[ASN][1000 genomes]
rs7115485	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7115596	0.85[ASN][1000 genomes]
rs7115945	0.83[ASN][1000 genomes]
rs7119840	0.85[ASN][1000 genomes]
rs7120610	0.86[ASN][1000 genomes]
rs7126723	0.85[ASN][1000 genomes]
rs7127075	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7925488	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11032360	RAB24	trans	lymphoblastoid	RTeQTL

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33744000-33755400	Weak transcription	Brain Germinal Matrix	brain
2	chr11:33744000-33755800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:33744000-33756400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr11:33744200-33755600	Weak transcription	Fetal Brain Female	brain
5	chr11:33744400-33756200	Weak transcription	Primary T cells from cord blood	blood
6	chr11:33744600-33755400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr11:33745400-33756200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:33746200-33756200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:33746400-33755200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr11:33746400-33755600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:33746600-33755400	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr11:33746600-33755600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:33746600-33755600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:33746600-33755800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:33746600-33756400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:33746600-33756400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:33746600-33756400	Weak transcription	Fetal Kidney	kidney
18	chr11:33746600-33756600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:33747000-33756000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:33747000-33756000	Weak transcription	Fetal Stomach	stomach
21	chr11:33747200-33755200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:33747200-33755400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr11:33747200-33755600	Weak transcription	Brain Hippocampus Middle	brain
24	chr11:33747200-33755600	Weak transcription	Brain Substantia Nigra	brain
25	chr11:33750600-33755200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:33750800-33757000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:33751200-33755600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:33751600-33755400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:33751600-33755400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:33752000-33757000	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
31	chr11:33752200-33755000	Genic enhancers	Osteobl	bone
32	chr11:33752200-33755200	Genic enhancers	NH-A	brain
33	chr11:33752200-33755800	Weak transcription	Liver	Liver
34	chr11:33752400-33755400	Enhancers	Colon Smooth Muscle	Colon
35	chr11:33752400-33755600	Weak transcription	Ovary	ovary
36	chr11:33752400-33755800	Weak transcription	Fetal Brain Male	brain
37	chr11:33752600-33755600	Weak transcription	Fetal Lung	lung
38	chr11:33752800-33755600	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr11:33753000-33755000	Enhancers	Primary neutrophils fromperipheralblood	blood
40	chr11:33753000-33755200	Genic enhancers	Left Ventricle	heart
41	chr11:33753000-33755400	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr11:33753000-33755600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr11:33753000-33755800	Transcr. at gene 5' and 3'	Hela-S3	cervix
44	chr11:33753000-33756000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr11:33753000-33756000	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr11:33753000-33756400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr11:33753000-33757000	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:33753000-33757000	Transcr. at gene 5' and 3'	HMEC	breast
49	chr11:33753000-33757000	Transcr. at gene 5' and 3'	NHEK	skin
50	chr11:33753200-33755400	Weak transcription	Duodenum Mucosa	Duodenum

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