Variant report

Variant	rs7115485
Chromosome Location	chr11:33788499-33788500
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:33786160..33788052-chr11:33788330..33790900,2	K562	blood:
2	chr11:33787714..33789411-chr11:33793527..33796515,2	MCF-7	breast:
3	chr11:33780255..33782060-chr11:33788387..33790193,2	K562	blood:

Variant related genes	Relation type
ENSG00000110429	Chromatin interaction
ENSG00000254508	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10742305	0.85[ASN][1000 genomes]
rs10768022	0.85[ASN][1000 genomes]
rs10768024	0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10768027	0.94[ASN][1000 genomes]
rs10836104	0.85[ASN][1000 genomes]
rs10836105	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11032360	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11600785	0.87[ASN][1000 genomes]
rs11826154	0.87[ASN][1000 genomes]
rs12272807	0.83[ASN][1000 genomes]
rs12295284	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1915894	0.88[ASN][1000 genomes]
rs2231454	0.95[ASN][1000 genomes]
rs3181270	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3181283	0.85[ASN][1000 genomes]
rs3794200	0.87[ASN][1000 genomes]
rs4517486	0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs57966527	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7103573	0.87[ASN][1000 genomes]
rs7104220	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7108627	0.87[ASN][1000 genomes]
rs7115596	0.88[ASN][1000 genomes]
rs7115945	0.86[ASN][1000 genomes]
rs7119840	0.88[ASN][1000 genomes]
rs7120610	0.87[ASN][1000 genomes]
rs7126723	0.88[ASN][1000 genomes]
rs7127075	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925488	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523356	chr11:33777334-33797408	Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7115485	RAB24	trans	lymphoblastoid	RTeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33758800-33795000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:33759000-33795200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:33763200-33792200	Strong transcription	Fetal Thymus	thymus
4	chr11:33763200-33792400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr11:33764200-33792000	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr11:33764400-33791200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr11:33764400-33792200	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr11:33764400-33792400	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr11:33764400-33792400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr11:33765400-33793800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:33767400-33791400	Strong transcription	Placenta	Placenta
12	chr11:33767600-33792400	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr11:33767800-33792200	Strong transcription	Adipose Nuclei	Adipose
14	chr11:33767800-33792400	Strong transcription	Primary B cells from peripheral blood	blood
15	chr11:33769600-33795000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:33770200-33791200	Strong transcription	Liver	Liver
17	chr11:33770400-33789200	Weak transcription	NHLF	lung
18	chr11:33770800-33791600	Strong transcription	Duodenum Mucosa	Duodenum
19	chr11:33776800-33792200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:33777000-33792200	Strong transcription	Fetal Lung	lung
21	chr11:33777200-33792400	Strong transcription	Primary B cells from cord blood	blood
22	chr11:33778200-33792200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr11:33778800-33794600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr11:33779600-33795000	Weak transcription	Colonic Mucosa	Colon
25	chr11:33780000-33792200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr11:33780800-33789000	Weak transcription	NH-A	brain
27	chr11:33782200-33792000	Weak transcription	Aorta	Aorta
28	chr11:33782200-33793400	Weak transcription	Right Ventricle	heart
29	chr11:33783000-33790400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:33783600-33790400	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr11:33783800-33792000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr11:33784400-33790600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr11:33784600-33789200	Strong transcription	Ovary	ovary
34	chr11:33784600-33790400	Strong transcription	Brain Hippocampus Middle	brain
35	chr11:33784600-33790600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:33784600-33791400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:33784600-33792000	Strong transcription	Fetal Intestine Large	intestine
38	chr11:33784600-33792200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr11:33784600-33792200	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr11:33784600-33792200	Strong transcription	Dnd41	blood
41	chr11:33784800-33789400	Strong transcription	Left Ventricle	heart
42	chr11:33784800-33791400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr11:33784800-33792200	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr11:33785000-33792400	Strong transcription	Fetal Muscle Trunk	muscle
45	chr11:33785200-33788600	Strong transcription	Thymus	Thymus
46	chr11:33785200-33788800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr11:33785200-33789400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:33785200-33792400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr11:33785200-33792400	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr11:33785400-33790400	Strong transcription	Fetal Kidney	kidney

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