Variant report

Variant	rs11032590
Chromosome Location	chr11:34297013-34297014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34295466..34297998-chr11:34348756..34350438,2	MCF-7	breast:
2	chr11:34295781..34298473-chr11:34301568..34303802,2	MCF-7	breast:
3	chr11:34295969..34298454-chr11:34328816..34331408,3	MCF-7	breast:
4	chr11:34294490..34298865-chr11:34377987..34381842,6	MCF-7	breast:
5	chr11:34295678..34297424-chr11:34350802..34352838,2	MCF-7	breast:
6	chr11:34295048..34297358-chr11:34352691..34354542,2	MCF-7	breast:
7	chr11:34295302..34298402-chr11:34377411..34380929,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11032517	1.00[AMR][1000 genomes]
rs11032565	1.00[AMR][1000 genomes]
rs11032594	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282782	1.00[AMR][1000 genomes]
rs12287726	1.00[AMR][1000 genomes]
rs2611092	1.00[AMR][1000 genomes]
rs2611110	1.00[AMR][1000 genomes]
rs744581	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2753052	chr11:34247462-34358300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv897206	chr11:34253421-34337564	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34285600-34299800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:34289000-34302600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:34293600-34299800	Weak transcription	HepG2	liver
4	chr11:34294200-34297600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:34294600-34297200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:34294800-34297400	Enhancers	Fetal Lung	lung
7	chr11:34294800-34297400	Enhancers	Fetal Muscle Leg	muscle
8	chr11:34294800-34299400	Enhancers	Placenta	Placenta
9	chr11:34295000-34297600	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr11:34295000-34297800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr11:34295000-34298600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:34295200-34297800	Enhancers	Pancreas	Pancrea
13	chr11:34295800-34297200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:34295800-34297200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:34295800-34297200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:34295800-34297200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:34295800-34297200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:34295800-34297200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:34295800-34297200	Enhancers	Osteobl	bone
20	chr11:34295800-34297400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:34295800-34297400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:34295800-34297400	Enhancers	HSMM	muscle
23	chr11:34295800-34297600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:34295800-34297800	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr11:34295800-34297800	Enhancers	HMEC	breast
26	chr11:34295800-34298400	Enhancers	Placenta Amnion	Placenta Amnion
27	chr11:34296000-34297200	Enhancers	Adipose Nuclei	Adipose
28	chr11:34296000-34297400	Enhancers	Fetal Heart	heart
29	chr11:34296200-34297200	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr11:34296200-34297200	Enhancers	Fetal Stomach	stomach
31	chr11:34296200-34297200	Enhancers	NHDF-Ad	bronchial
32	chr11:34296200-34297400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:34296200-34297400	Enhancers	Psoas Muscle	Psoas
34	chr11:34296400-34297200	Enhancers	Aorta	Aorta
35	chr11:34296400-34297200	Enhancers	Liver	Liver
36	chr11:34296400-34297600	Enhancers	Right Ventricle	heart
37	chr11:34296400-34298200	Enhancers	Fetal Muscle Trunk	muscle
38	chr11:34296600-34297200	Flanking Active TSS	NHEK	skin
39	chr11:34296600-34297600	Enhancers	Esophagus	oesophagus
40	chr11:34296600-34297800	Enhancers	Right Atrium	heart
41	chr11:34296800-34297200	Enhancers	Rectal Smooth Muscle	rectum
42	chr11:34296800-34297400	Enhancers	NH-A	brain
43	chr11:34296800-34299800	Weak transcription	Duodenum Mucosa	Duodenum
44	chr11:34296800-34301600	Weak transcription	HSMMtube	muscle
45	chr11:34296800-34303000	Weak transcription	Gastric	stomach
46	chr11:34296800-34306200	Weak transcription	Fetal Brain Female	brain
47	chr11:34297000-34297400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:34297000-34297400	Enhancers	NHLF	lung
49	chr11:34297000-34297600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr11:34297000-34297800	Enhancers	Hela-S3	cervix

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