The 2.0 version of rSNPBase

Variant report

Variant rs12282782
Chromosome Location chr11:34183480-34183481
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:89 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:34138800-34185600 Strong transcription Fetal Brain Female brain
2 chr11:34146200-34187600 Strong transcription Cortex derived primary cultured neurospheres brain
3 chr11:34152200-34184800 Strong transcription Brain Germinal Matrix brain
4 chr11:34152400-34186600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
5 chr11:34165800-34184600 Weak transcription Stomach Mucosa stomach
6 chr11:34169600-34196200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr11:34172400-34185200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr11:34172600-34190400 Strong transcription Fetal Intestine Small intestine
9 chr11:34173000-34183600 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr11:34173200-34195600 Weak transcription iPS-20b Cell Line embryonic stem cell
11 chr11:34173400-34189400 Strong transcription HSMMtube muscle
12 chr11:34173800-34185000 Strong transcription Duodenum Mucosa Duodenum
13 chr11:34174400-34184000 Weak transcription Fetal Intestine Large intestine
14 chr11:34174400-34190800 Weak transcription Colonic Mucosa Colon
15 chr11:34174600-34193400 Weak transcription Rectal Mucosa Donor 29 rectum
16 chr11:34175400-34187400 Weak transcription HMEC breast
17 chr11:34176000-34186600 Weak transcription Esophagus oesophagus
18 chr11:34176600-34188600 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr11:34176800-34184800 Weak transcription Primary monocytes fromperipheralblood blood
20 chr11:34176800-34187400 Weak transcription iPS-15b Cell Line embryonic stem cell
21 chr11:34176800-34195600 Weak transcription Monocytes-CD14+_RO01746 blood
22 chr11:34177000-34196200 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr11:34177200-34184200 Weak transcription HUES64 Cell Line embryonic stem cell
24 chr11:34177200-34190200 Strong transcription Primary neutrophils fromperipheralblood blood
25 chr11:34177400-34187200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr11:34177400-34195400 Weak transcription H1 Cell Line embryonic stem cell
27 chr11:34177600-34187200 Weak transcription NHEK skin
28 chr11:34177600-34194600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
29 chr11:34177600-34196200 Weak transcription Primary T cells from cord blood blood
30 chr11:34177800-34183600 Weak transcription Brain Substantia Nigra brain
31 chr11:34177800-34188200 Weak transcription H9 Cell Line embryonic stem cell
32 chr11:34177800-34195800 Weak transcription Spleen Spleen
33 chr11:34177800-34196000 Weak transcription GM12878-XiMat blood
34 chr11:34178000-34185600 Weak transcription Colon Smooth Muscle Colon
35 chr11:34178000-34187400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr11:34178000-34188000 Weak transcription Aorta Aorta
37 chr11:34178800-34184800 Strong transcription Brain Anterior Caudate brain
38 chr11:34178800-34192600 Strong transcription Skeletal Muscle Male skeletal muscle
39 chr11:34178800-34195200 Weak transcription Hela-S3 cervix
40 chr11:34179000-34183800 Strong transcription Thymus Thymus
41 chr11:34179000-34184200 Strong transcription HUES6 Cell Line embryonic stem cell
42 chr11:34179200-34191000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
43 chr11:34179200-34195400 Weak transcription Adipose Nuclei Adipose
44 chr11:34179400-34183600 Weak transcription Gastric stomach
45 chr11:34179400-34196000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
46 chr11:34179600-34189400 Weak transcription Lung lung
47 chr11:34179600-34193600 Strong transcription Liver Liver
48 chr11:34180000-34195200 Strong transcription HepG2 liver
49 chr11:34180600-34185200 Strong transcription Skeletal Muscle Female skeletal muscle
50 chr11:34180600-34195400 Weak transcription Fetal Thymus thymus

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Last update: Aug 31, 2015