Variant report

Variant	rs11032783
Chromosome Location	chr11:34636372-34636373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34622016..34626475-chr11:34634436..34638216,4	K562	blood:
2	chr11:34630414..34634068-chr11:34634518..34638275,4	K562	blood:
3	chr11:34626866..34628480-chr11:34633656..34636586,2	K562	blood:
4	chr11:34635743..34637873-chr11:34640545..34642777,2	MCF-7	breast:
5	chr11:34630477..34632463-chr11:34633814..34636376,2	K562	blood:
6	chr11:34636228..34637747-chr11:34653006..34655349,2	K562	blood:
7	chr11:34635183..34637039-chr11:34658826..34661301,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135373	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11032784	0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270873	0.85[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272602	0.91[AFR][1000 genomes]
rs2167906	1.00[ASW][hapmap];0.88[LWK][hapmap];0.91[MKK][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes]
rs7117366	0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7926672	1.00[ASW][hapmap];0.91[LWK][hapmap];0.93[MKK][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes]
rs7927246	0.85[YRI][hapmap];0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832116	chr11:34539536-34673900	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34608400-34643600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:34625400-34642800	Weak transcription	Gastric	stomach
3	chr11:34628400-34638600	Weak transcription	Small Intestine	intestine
4	chr11:34628600-34637800	Weak transcription	Stomach Mucosa	stomach
5	chr11:34634000-34637400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:34634000-34643200	Weak transcription	Lung	lung
7	chr11:34634200-34636600	Enhancers	Adipose Nuclei	Adipose
8	chr11:34634200-34636600	Enhancers	HepG2	liver
9	chr11:34634200-34636800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:34634400-34637600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr11:34634600-34636400	Enhancers	NHDF-Ad	bronchial
12	chr11:34634600-34636600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:34634600-34636600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr11:34634600-34637200	Enhancers	Primary B cells from peripheral blood	blood
15	chr11:34634800-34636400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:34634800-34636800	Enhancers	HSMMtube	muscle
17	chr11:34635000-34636400	Enhancers	HSMM	muscle
18	chr11:34635000-34643400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:34635200-34636800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:34635200-34638600	Weak transcription	Pancreas	Pancrea
21	chr11:34635200-34642000	Weak transcription	Esophagus	oesophagus
22	chr11:34635400-34636800	Enhancers	Duodenum Mucosa	Duodenum
23	chr11:34635600-34636400	Enhancers	Fetal Intestine Large	intestine
24	chr11:34635600-34637400	Enhancers	GM12878-XiMat	blood
25	chr11:34635800-34636400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:34635800-34636400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:34635800-34636400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr11:34635800-34636600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:34635800-34636800	Enhancers	Osteobl	bone
30	chr11:34636000-34636400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:34636000-34636600	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr11:34636000-34636800	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr11:34636000-34637200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:34636000-34637400	Enhancers	H1 Cell Line	embryonic stem cell
35	chr11:34636200-34636600	Flanking Active TSS	Fetal Heart	heart
36	chr11:34636200-34638600	Weak transcription	Right Atrium	heart
37	chr11:34636200-34639600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr11:34636200-34641000	Weak transcription	Fetal Intestine Small	intestine
39	chr11:34636200-34644000	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links