Variant report

Variant	rs12270873
Chromosome Location	chr11:34636733-34636734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34622016..34626475-chr11:34634436..34638216,4	K562	blood:
2	chr11:34630414..34634068-chr11:34634518..34638275,4	K562	blood:
3	chr11:34635743..34637873-chr11:34640545..34642777,2	MCF-7	breast:
4	chr11:34636591..34639516-chr11:34641678..34643753,2	K562	blood:
5	chr11:34636228..34637747-chr11:34653006..34655349,2	K562	blood:
6	chr11:34635183..34637039-chr11:34658826..34661301,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135373	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11032783	0.85[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11032784	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272602	0.91[YRI][hapmap];0.89[AFR][1000 genomes]
rs2167906	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7117366	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7926672	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7927246	1.00[YRI][hapmap];0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832116	chr11:34539536-34673900	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34608400-34643600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:34625400-34642800	Weak transcription	Gastric	stomach
3	chr11:34628400-34638600	Weak transcription	Small Intestine	intestine
4	chr11:34628600-34637800	Weak transcription	Stomach Mucosa	stomach
5	chr11:34634000-34637400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:34634000-34643200	Weak transcription	Lung	lung
7	chr11:34634200-34636800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:34634400-34637600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr11:34634600-34637200	Enhancers	Primary B cells from peripheral blood	blood
10	chr11:34634800-34636800	Enhancers	HSMMtube	muscle
11	chr11:34635000-34643400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:34635200-34636800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:34635200-34638600	Weak transcription	Pancreas	Pancrea
14	chr11:34635200-34642000	Weak transcription	Esophagus	oesophagus
15	chr11:34635400-34636800	Enhancers	Duodenum Mucosa	Duodenum
16	chr11:34635600-34637400	Enhancers	GM12878-XiMat	blood
17	chr11:34635800-34636800	Enhancers	Osteobl	bone
18	chr11:34636000-34636800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr11:34636000-34637200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:34636000-34637400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr11:34636200-34638600	Weak transcription	Right Atrium	heart
22	chr11:34636200-34639600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:34636200-34641000	Weak transcription	Fetal Intestine Small	intestine
24	chr11:34636200-34644000	Enhancers	K562	blood
25	chr11:34636400-34637200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:34636400-34637800	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr11:34636400-34641800	Weak transcription	Fetal Intestine Large	intestine
28	chr11:34636600-34637400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr11:34636600-34637400	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr11:34636600-34637600	Weak transcription	Adipose Nuclei	Adipose
31	chr11:34636600-34638400	Enhancers	Fetal Heart	heart
32	chr11:34636600-34640800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr11:34636600-34641400	Weak transcription	Rectal Mucosa Donor 31	rectum

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