Variant report

Variant	rs11032801
Chromosome Location	chr11:34672889-34672890
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:34667165..34669347-chr11:34670992..34673618,3	K562	blood:
2	chr11:34671248..34673590-chr11:34674140..34675712,2	MCF-7	breast:
3	chr11:34661556..34663728-chr11:34672732..34675363,2	K562	blood:
4	chr11:34669421..34671173-chr11:34672153..34673980,2	MCF-7	breast:
5	chr11:34659576..34666077-chr11:34671950..34677960,8	MCF-7	breast:
6	chr11:34667026..34669860-chr11:34670729..34674074,4	MCF-7	breast:
7	chr11:34671534..34674106-chr11:34677263..34680105,2	K562	blood:
8	chr11:34660689..34662189-chr11:34672411..34674964,2	MCF-7	breast:
9	chr11:34624693..34626791-chr11:34672431..34674013,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000135373	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1048904	0.89[ASN][1000 genomes]
rs10836269	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11032803	0.91[CHB][hapmap];0.85[JPT][hapmap];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1377492	0.87[ASN][1000 genomes]
rs2274438	0.91[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2281909	0.88[ASN][1000 genomes]
rs286889	0.81[JPT][hapmap]
rs286896	0.95[JPT][hapmap]
rs286897	0.95[JPT][hapmap]
rs972857	0.87[ASN][1000 genomes]
rs972858	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832116	chr11:34539536-34673900	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv832117	chr11:34639008-34831199	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1045130	chr11:34641598-34777725	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1052192	chr11:34641598-34781288	ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1051492	chr11:34641598-34789331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv1052008	chr11:34641598-34794024	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv467788	chr11:34642493-34770494	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv553998	chr11:34642493-34770494	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv518807	chr11:34642493-34780936	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv519718	chr11:34642493-34780936	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	nsv467789	chr11:34642493-34780936	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv467790	chr11:34642493-34780936	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv553999	chr11:34642493-34780936	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv554000	chr11:34643780-34780936	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
15	nsv869812	chr11:34648088-34810956	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34656200-34674400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:34664400-34677000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:34664600-34681800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:34666800-34673200	Weak transcription	HepG2	liver
5	chr11:34667200-34673600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:34667400-34681800	Weak transcription	Fetal Kidney	kidney
7	chr11:34667600-34674000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:34668200-34675400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:34668400-34674000	Strong transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:34669400-34674000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:34669400-34674400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr11:34669400-34676000	Genic enhancers	Rectal Mucosa Donor 31	rectum
13	chr11:34669600-34673800	Weak transcription	HMEC	breast
14	chr11:34669600-34674800	Weak transcription	HSMM	muscle
15	chr11:34669600-34675000	Weak transcription	HSMMtube	muscle
16	chr11:34669600-34678200	Enhancers	Stomach Mucosa	stomach
17	chr11:34670000-34673200	Genic enhancers	Duodenum Mucosa	Duodenum
18	chr11:34670400-34674200	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr11:34670400-34674800	Genic enhancers	Gastric	stomach
20	chr11:34670600-34673200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr11:34671000-34674000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr11:34671200-34674200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:34671200-34674200	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr11:34671200-34674600	Genic enhancers	NHEK	skin
25	chr11:34671200-34676400	Enhancers	Primary B cells from peripheral blood	blood
26	chr11:34671400-34673400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:34671400-34674400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:34671400-34674400	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr11:34671400-34674800	Enhancers	Small Intestine	intestine
30	chr11:34671600-34673200	Weak transcription	NHDF-Ad	bronchial
31	chr11:34671600-34673800	Strong transcription	Colonic Mucosa	Colon
32	chr11:34671600-34674200	Strong transcription	Fetal Intestine Large	intestine
33	chr11:34671600-34675800	Enhancers	K562	blood
34	chr11:34671600-34676800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr11:34671600-34681600	Weak transcription	Fetal Stomach	stomach
36	chr11:34671800-34673000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
37	chr11:34671800-34673000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
38	chr11:34671800-34673200	Weak transcription	A549	lung
39	chr11:34671800-34673400	Weak transcription	Pancreas	Pancrea
40	chr11:34671800-34673800	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr11:34671800-34673800	Enhancers	NH-A	brain
42	chr11:34671800-34674600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:34671800-34676600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr11:34672000-34673000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:34672000-34673000	Weak transcription	Hela-S3	cervix
46	chr11:34672000-34673800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr11:34672000-34676800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:34672000-34677200	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr11:34672200-34673000	Strong transcription	Esophagus	oesophagus
50	chr11:34672200-34673400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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