Variant report

Variant	rs11032803
Chromosome Location	chr11:34677878-34677879
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34659576..34666077-chr11:34671950..34677960,8	MCF-7	breast:
2	chr11:34675778..34678396-chr11:34681432..34685655,3	K562	blood:
3	chr11:34670807..34672858-chr11:34677571..34680304,2	K562	blood:
4	chr11:34676055..34678665-chr11:34685926..34687942,2	MCF-7	breast:
5	chr11:34671534..34674106-chr11:34677263..34680105,2	K562	blood:
6	chr11:34675426..34678725-chr11:34681137..34686486,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135373	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1048904	0.96[ASN][1000 genomes]
rs10768087	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10768091	0.87[EUR][1000 genomes]
rs10768092	0.83[EUR][1000 genomes]
rs10836269	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10836280	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10836288	0.87[EUR][1000 genomes]
rs11032801	0.91[CHB][hapmap];0.85[JPT][hapmap];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11032809	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11032810	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11032820	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12573989	0.87[EUR][1000 genomes]
rs1377492	0.95[ASN][1000 genomes]
rs2274438	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2281909	0.97[ASN][1000 genomes]
rs286872	1.00[EUR][1000 genomes]
rs286889	0.85[JPT][hapmap]
rs286896	0.90[JPT][hapmap]
rs286897	0.90[JPT][hapmap]
rs972857	0.96[ASN][1000 genomes]
rs972858	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832117	chr11:34639008-34831199	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1045130	chr11:34641598-34777725	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1052192	chr11:34641598-34781288	ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1051492	chr11:34641598-34789331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1052008	chr11:34641598-34794024	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv467788	chr11:34642493-34770494	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv553998	chr11:34642493-34770494	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv518807	chr11:34642493-34780936	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv519718	chr11:34642493-34780936	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv467789	chr11:34642493-34780936	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	nsv467790	chr11:34642493-34780936	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv553999	chr11:34642493-34780936	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv554000	chr11:34643780-34780936	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv869812	chr11:34648088-34810956	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34664600-34681800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:34667400-34681800	Weak transcription	Fetal Kidney	kidney
3	chr11:34669600-34678200	Enhancers	Stomach Mucosa	stomach
4	chr11:34671600-34681600	Weak transcription	Fetal Stomach	stomach
5	chr11:34672200-34678600	Weak transcription	Right Atrium	heart
6	chr11:34672800-34678400	Enhancers	Brain Substantia Nigra	brain
7	chr11:34673200-34678800	Enhancers	Brain Hippocampus Middle	brain
8	chr11:34674400-34678600	Enhancers	Brain Cingulate Gyrus	brain
9	chr11:34674400-34678800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:34674600-34678200	Enhancers	Brain Angular Gyrus	brain
11	chr11:34674800-34689200	Weak transcription	Gastric	stomach
12	chr11:34675600-34678000	Enhancers	HMEC	breast
13	chr11:34676000-34685200	Strong transcription	Rectal Mucosa Donor 31	rectum
14	chr11:34676400-34685400	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr11:34676600-34678000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:34676600-34678000	Weak transcription	Pancreas	Pancrea
17	chr11:34676600-34682000	Strong transcription	Fetal Intestine Large	intestine
18	chr11:34676600-34689200	Weak transcription	Esophagus	oesophagus
19	chr11:34676800-34678000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:34676800-34678400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:34676800-34678600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:34676800-34679400	Strong transcription	Fetal Intestine Small	intestine
23	chr11:34676800-34679800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:34676800-34683400	Strong transcription	Duodenum Mucosa	Duodenum
25	chr11:34677000-34678000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr11:34677000-34678400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:34677000-34680400	Weak transcription	Colonic Mucosa	Colon
28	chr11:34677000-34683400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:34677000-34684000	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:34677000-34688800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr11:34677200-34678400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:34677200-34678800	Enhancers	Hela-S3	cervix
33	chr11:34677400-34678400	Weak transcription	Liver	Liver
34	chr11:34677400-34678800	Enhancers	A549	lung
35	chr11:34677400-34681600	Enhancers	HepG2	liver
36	chr11:34677600-34678000	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr11:34677600-34682000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr11:34677600-34684000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:34677800-34678400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:34677800-34682000	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr11:34677800-34683600	Strong transcription	NHEK	skin

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