Variant report

Variant	rs286872
Chromosome Location	chr11:34702703-34702704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34695469..34697282-chr11:34700694..34703125,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10768087	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10768091	0.87[EUR][1000 genomes]
rs10768092	0.83[EUR][1000 genomes]
rs10836269	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10836278	0.88[ASN][1000 genomes]
rs10836279	0.89[ASN][1000 genomes]
rs10836280	0.87[EUR][1000 genomes]
rs10836288	0.87[EUR][1000 genomes]
rs11032803	1.00[CEU][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11032807	0.97[ASN][1000 genomes]
rs11032808	0.97[ASN][1000 genomes]
rs11032809	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11032810	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11032820	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11032821	0.89[ASN][1000 genomes]
rs12573989	0.87[EUR][1000 genomes]
rs12574908	0.97[ASN][1000 genomes]
rs1418188	0.89[ASN][1000 genomes]
rs1418189	0.89[ASN][1000 genomes]
rs1453381	0.97[ASN][1000 genomes]
rs2274438	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs286857	0.80[AFR][1000 genomes]
rs385181	0.95[AFR][1000 genomes]
rs397378	0.85[AFR][1000 genomes]
rs4403781	0.81[ASN][1000 genomes]
rs442735	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832117	chr11:34639008-34831199	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1045130	chr11:34641598-34777725	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1052192	chr11:34641598-34781288	ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1051492	chr11:34641598-34789331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1052008	chr11:34641598-34794024	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv467788	chr11:34642493-34770494	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv553998	chr11:34642493-34770494	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv518807	chr11:34642493-34780936	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv519718	chr11:34642493-34780936	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv467789	chr11:34642493-34780936	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	nsv467790	chr11:34642493-34780936	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv553999	chr11:34642493-34780936	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv554000	chr11:34643780-34780936	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv869812	chr11:34648088-34810956	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
15	nsv897213	chr11:34695389-34752562	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34700000-34703800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:34700600-34707200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:34701400-34703600	Enhancers	NHDF-Ad	bronchial
4	chr11:34701600-34703400	Enhancers	HSMMtube	muscle
5	chr11:34701800-34703400	Enhancers	NH-A	brain
6	chr11:34701800-34703600	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr11:34701800-34706600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:34701800-34708200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:34702000-34703200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:34702000-34703800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:34702000-34703800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:34702200-34703600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr11:34702200-34705200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr11:34702200-34705200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:34702200-34705800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr11:34702400-34703200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:34702400-34703400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr11:34702400-34703400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:34702400-34703600	Enhancers	HUVEC	blood vessel
20	chr11:34702400-34708200	Enhancers	HMEC	breast
21	chr11:34702600-34702800	Flanking Active TSS	Osteobl	bone
22	chr11:34702600-34703200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:34702600-34703200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
24	chr11:34702600-34703200	Flanking Active TSS	Hela-S3	cervix
25	chr11:34702600-34703200	Enhancers	NHLF	lung
26	chr11:34702600-34703400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr11:34702600-34703400	Flanking Active TSS	A549	lung
28	chr11:34702600-34703400	Enhancers	HSMM	muscle
29	chr11:34702600-34703600	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr11:34702600-34703600	Enhancers	HepG2	liver
31	chr11:34702600-34705000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:34702600-34705200	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr11:34702600-34706600	Enhancers	NHEK	skin

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