Variant report

Variant	rs11032943
Chromosome Location	chr11:34967328-34967329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34936782..34939692-chr11:34966895..34969731,2	K562	blood:
2	chr11:34938300..34939878-chr11:34967011..34969816,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149089	Chromatin interaction
ENSG00000110435	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10488801	1.00[JPT][hapmap];0.90[YRI][hapmap]
rs10488803	1.00[JPT][hapmap];0.82[AFR][1000 genomes]
rs10488804	1.00[JPT][hapmap];0.82[AFR][1000 genomes]
rs10488806	0.86[JPT][hapmap]
rs1049306	1.00[JPT][hapmap];0.90[YRI][hapmap]
rs1049307	1.00[JPT][hapmap];0.90[YRI][hapmap]
rs11032927	1.00[JPT][hapmap];0.90[YRI][hapmap]
rs11032934	0.83[AFR][1000 genomes]
rs11032935	0.83[AFR][1000 genomes]
rs11032937	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11032938	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11032940	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11032941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11032942	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11032973	0.80[ASN][1000 genomes]
rs11500297	1.00[JPT][hapmap];0.86[YRI][hapmap]
rs12273271	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12274383	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12274490	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12275275	0.82[AFR][1000 genomes]
rs12275277	0.82[AFR][1000 genomes]
rs12275339	0.83[AFR][1000 genomes]
rs12275620	1.00[JPT][hapmap];0.87[YRI][hapmap]
rs12275911	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12276735	1.00[JPT][hapmap];0.87[YRI][hapmap]
rs12278245	1.00[JPT][hapmap];0.86[YRI][hapmap]
rs12279553	0.83[AFR][1000 genomes]
rs12282382	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12282419	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12283763	1.00[JPT][hapmap];0.87[YRI][hapmap]
rs12285752	0.88[JPT][hapmap]
rs12286442	0.83[AFR][1000 genomes]
rs12286538	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12288594	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs12288628	0.82[AFR][1000 genomes]
rs12289218	0.83[AFR][1000 genomes]
rs12292719	0.89[JPT][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs12293733	1.00[JPT][hapmap]
rs12294047	0.83[AFR][1000 genomes]
rs12294125	1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12294594	0.83[AFR][1000 genomes]
rs12295537	0.82[AFR][1000 genomes]
rs12385808	0.86[ASN][1000 genomes]
rs2163377	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3763926	1.00[JPT][hapmap];0.87[YRI][hapmap]
rs3763929	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs3763931	1.00[JPT][hapmap];0.90[YRI][hapmap]
rs3763933	1.00[JPT][hapmap];0.90[YRI][hapmap]
rs3763934	1.00[JPT][hapmap];0.90[YRI][hapmap]
rs3763937	1.00[JPT][hapmap]
rs3794161	0.82[AFR][1000 genomes]
rs3794162	0.82[AFR][1000 genomes]
rs3794163	0.82[AFR][1000 genomes]
rs3794165	1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes]
rs3794170	1.00[JPT][hapmap];0.90[YRI][hapmap]
rs3818393	1.00[JPT][hapmap];0.90[YRI][hapmap]
rs3818401	1.00[JPT][hapmap];0.93[YRI][hapmap]
rs56898019	0.80[AFR][1000 genomes]
rs57795451	0.80[ASN][1000 genomes]
rs60346281	0.80[AFR][1000 genomes]
rs60774328	0.80[AFR][1000 genomes]
rs6484746	1.00[JPT][hapmap]
rs6484748	0.83[AFR][1000 genomes]
rs7102259	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs7110223	1.00[JPT][hapmap]
rs7111607	1.00[JPT][hapmap]
rs7113708	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs7115153	0.84[AFR][1000 genomes]
rs7116411	0.88[JPT][hapmap]
rs7118017	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7119524	0.83[AFR][1000 genomes]
rs7119958	0.85[CHB][hapmap];0.89[JPT][hapmap];0.82[AFR][1000 genomes]
rs7126410	0.87[EUR][1000 genomes]
rs7126659	1.00[JPT][hapmap];0.90[YRI][hapmap]
rs7129830	1.00[JPT][hapmap]
rs7924507	0.83[AFR][1000 genomes]
rs7925118	0.83[AFR][1000 genomes]
rs7931454	1.00[JPT][hapmap]
rs7931814	0.83[AFR][1000 genomes]
rs7938962	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7940226	0.83[AFR][1000 genomes]
rs7941930	1.00[JPT][hapmap]
rs7945013	0.83[AFR][1000 genomes]
rs7947650	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7952208	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv2754010	chr11:34940724-35001024	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11032943	PDHX	Cis_1M	lymphoblastoid	RTeQTL
rs11032943	APIP	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34938800-34990400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:34939200-35000000	Weak transcription	Thymus	Thymus
3	chr11:34940200-34970400	Weak transcription	Left Ventricle	heart
4	chr11:34940200-34984800	Weak transcription	Fetal Stomach	stomach
5	chr11:34948000-34990600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:34948000-35000400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:34948000-35006800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr11:34948200-34997000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr11:34948600-34990400	Weak transcription	HUVEC	blood vessel
10	chr11:34949200-34990400	Weak transcription	NHEK	skin
11	chr11:34950400-34991600	Weak transcription	NHLF	lung
12	chr11:34951000-34970400	Weak transcription	Aorta	Aorta
13	chr11:34951000-34970400	Weak transcription	Ovary	ovary
14	chr11:34951000-34981400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:34951400-34986600	Weak transcription	Fetal Thymus	thymus
16	chr11:34951600-34992000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:34951800-34970400	Weak transcription	Pancreas	Pancrea
18	chr11:34951800-34985000	Weak transcription	Lung	lung
19	chr11:34951800-34988200	Weak transcription	Fetal Intestine Small	intestine
20	chr11:34951800-35000200	Weak transcription	Psoas Muscle	Psoas
21	chr11:34952200-35010800	Weak transcription	Small Intestine	intestine
22	chr11:34952400-34990200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:34954400-34969400	Weak transcription	Fetal Lung	lung
24	chr11:34954600-34978800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr11:34954600-34986600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr11:34954600-34987800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr11:34954600-34991200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr11:34954800-34988200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr11:34955000-34969600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr11:34955000-34988200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr11:34955200-34969600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr11:34955400-34970400	Weak transcription	Liver	Liver
33	chr11:34955400-34985200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:34955400-34989000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr11:34955800-34979200	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr11:34955800-34981200	Weak transcription	Brain Anterior Caudate	brain
37	chr11:34955800-34985000	Weak transcription	Placenta	Placenta
38	chr11:34956000-34969600	Weak transcription	Brain Angular Gyrus	brain
39	chr11:34956200-34968200	Weak transcription	Primary T cells from cord blood	blood
40	chr11:34956200-34980800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr11:34956400-34990600	Weak transcription	Fetal Muscle Trunk	muscle
42	chr11:34956800-34969000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr11:34958200-34978800	Weak transcription	Primary B cells from peripheral blood	blood
44	chr11:34958200-34978800	Weak transcription	Hela-S3	cervix
45	chr11:34958200-34991600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr11:34958200-34995600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr11:34958800-34969600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr11:34959000-34979000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr11:34959000-35019600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr11:34959400-34969600	Weak transcription	Dnd41	blood

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