Variant report

Variant	rs11033003
Chromosome Location	chr11:35122033-35122034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35121360..35123846-chr11:35132606..35135309,2	K562	blood:
2	chr11:35121498..35123460-chr11:35254836..35257289,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11032999	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11033002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1559759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv540999	chr11:35021936-35185471	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv2758263	chr11:35029933-35226784	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv2759818	chr11:35029933-35238578	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv541000	chr11:35053717-35185471	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv541001	chr11:35053717-35224624	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	esv2757437	chr11:35067482-35238578	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv2752912	chr11:35074167-35238578	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	nsv508623	chr11:35094933-35203363	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
10	nsv541002	chr11:35101282-35224624	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv975326	chr11:35103908-35125981	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35110400-35124000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:35118400-35124600	Enhancers	Colon Smooth Muscle	Colon
3	chr11:35118600-35124000	Enhancers	Adipose Nuclei	Adipose
4	chr11:35118600-35125200	Enhancers	Stomach Smooth Muscle	stomach
5	chr11:35119400-35122400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:35119400-35122600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:35119400-35123000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:35119400-35123400	Enhancers	NHDF-Ad	bronchial
9	chr11:35119400-35124600	Enhancers	Fetal Stomach	stomach
10	chr11:35119400-35125400	Enhancers	Fetal Muscle Leg	muscle
11	chr11:35119400-35127200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr11:35119600-35122400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:35119600-35122800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:35119600-35123000	Enhancers	NHLF	lung
15	chr11:35119600-35123200	Enhancers	Aorta	Aorta
16	chr11:35119600-35123400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:35119600-35124400	Enhancers	Rectal Smooth Muscle	rectum
18	chr11:35119600-35126400	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr11:35119800-35123000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr11:35120400-35123000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr11:35120400-35123000	Enhancers	Osteobl	bone
22	chr11:35120600-35122200	Weak transcription	Lung	lung
23	chr11:35120600-35122400	Enhancers	NH-A	brain
24	chr11:35120800-35126800	Weak transcription	Left Ventricle	heart
25	chr11:35121200-35122200	Weak transcription	Brain Hippocampus Middle	brain
26	chr11:35121200-35122200	Weak transcription	Psoas Muscle	Psoas
27	chr11:35121200-35125000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:35121400-35122200	Weak transcription	Placenta	Placenta
29	chr11:35121400-35122600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:35121400-35126200	Weak transcription	K562	blood
31	chr11:35121400-35127000	Weak transcription	Right Atrium	heart
32	chr11:35121600-35123400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr11:35121600-35123600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:35121600-35124800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:35121800-35122200	Weak transcription	Right Ventricle	heart
36	chr11:35121800-35122200	Weak transcription	HSMM	muscle
37	chr11:35121800-35122200	Weak transcription	HSMMtube	muscle
38	chr11:35121800-35122400	Enhancers	Fetal Muscle Trunk	muscle
39	chr11:35121800-35124800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:35121800-35124800	Weak transcription	HMEC	breast
41	chr11:35121800-35125000	Weak transcription	NHEK	skin
42	chr11:35122000-35123000	Enhancers	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links