Variant report

Variant	rs11033599
Chromosome Location	chr11:36430089-36430090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36429857..36432572-chr11:36436578..36438968,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11033593	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033598	0.92[YRI][hapmap];0.88[AFR][1000 genomes]
rs11033600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033603	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11033612	0.92[EUR][1000 genomes]
rs11602467	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12270539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270739	0.91[ASN][1000 genomes]
rs12279091	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12290256	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12292945	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12295535	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1365121	0.96[EUR][1000 genomes]
rs28520436	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56403503	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs734429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924917	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925254	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv2761662	chr11:36429857-36434542	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36400200-36475400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:36400600-36431200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr11:36400800-36443600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:36402000-36431800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:36403000-36438200	Weak transcription	Ovary	ovary
6	chr11:36407200-36441800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr11:36408400-36433000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:36413000-36471000	Weak transcription	Aorta	Aorta
9	chr11:36413200-36441600	Weak transcription	HSMMtube	muscle
10	chr11:36414800-36475600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:36416600-36431600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:36418200-36436800	Weak transcription	Pancreas	Pancrea
13	chr11:36420200-36431800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:36420200-36434800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:36420200-36434800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:36420400-36430600	Weak transcription	Lung	lung
17	chr11:36420400-36453200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:36420600-36435200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:36420600-36435200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:36421400-36432400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr11:36421400-36435000	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:36421800-36432600	Weak transcription	Brain Anterior Caudate	brain
23	chr11:36422400-36430600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:36423000-36432000	Weak transcription	Right Ventricle	heart
25	chr11:36423400-36441800	Weak transcription	HMEC	breast
26	chr11:36424200-36431200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:36424800-36430600	Weak transcription	Left Ventricle	heart
28	chr11:36425000-36431800	Weak transcription	Esophagus	oesophagus
29	chr11:36425600-36430200	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr11:36425800-36430200	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr11:36425800-36432400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr11:36425800-36439000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr11:36425800-36441400	Weak transcription	Fetal Kidney	kidney
34	chr11:36426200-36435200	Strong transcription	Fetal Intestine Small	intestine
35	chr11:36426400-36430600	Weak transcription	Fetal Stomach	stomach
36	chr11:36426400-36434400	Weak transcription	HSMM	muscle
37	chr11:36426400-36435200	Strong transcription	Fetal Intestine Large	intestine
38	chr11:36426600-36430600	Weak transcription	Right Atrium	heart
39	chr11:36426600-36431600	Weak transcription	Small Intestine	intestine
40	chr11:36427200-36430600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr11:36427400-36434200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr11:36427600-36430400	Weak transcription	Brain Substantia Nigra	brain
43	chr11:36427800-36434200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr11:36428000-36435000	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr11:36428200-36430200	Weak transcription	Brain Hippocampus Middle	brain
46	chr11:36428200-36430200	Weak transcription	K562	blood
47	chr11:36428200-36430400	Weak transcription	Osteobl	bone
48	chr11:36428200-36432000	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr11:36428200-36432800	Enhancers	Primary B cells from peripheral blood	blood
50	chr11:36428200-36435000	Enhancers	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links