Variant report

Variant	rs7925254
Chromosome Location	chr11:36427295-36427296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11033593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033595	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033599	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033600	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033603	0.92[EUR][1000 genomes]
rs11033612	0.92[EUR][1000 genomes]
rs11602467	0.84[EUR][1000 genomes]
rs12270539	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270739	0.91[ASN][1000 genomes]
rs12279091	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12290256	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12292945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12295535	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1365121	0.96[EUR][1000 genomes]
rs28520436	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56403503	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs734429	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36400200-36475400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:36400600-36431200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr11:36400800-36443600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:36402000-36431800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:36403000-36438200	Weak transcription	Ovary	ovary
6	chr11:36407200-36441800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr11:36408400-36433000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:36409800-36430000	Weak transcription	Liver	Liver
9	chr11:36412000-36427600	Weak transcription	Placenta	Placenta
10	chr11:36413000-36471000	Weak transcription	Aorta	Aorta
11	chr11:36413200-36441600	Weak transcription	HSMMtube	muscle
12	chr11:36413400-36430000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr11:36413800-36428400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:36414800-36428800	Weak transcription	Stomach Mucosa	stomach
15	chr11:36414800-36475600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr11:36415000-36429800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:36415400-36429400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:36416600-36431600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr11:36417600-36429000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:36418200-36436800	Weak transcription	Pancreas	Pancrea
21	chr11:36419400-36428800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:36419600-36430000	Strong transcription	Placenta Amnion	Placenta Amnion
23	chr11:36419800-36429200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr11:36420200-36429000	Strong transcription	NHEK	skin
25	chr11:36420200-36431800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:36420200-36434800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:36420200-36434800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:36420400-36430600	Weak transcription	Lung	lung
29	chr11:36420400-36453200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:36420600-36435200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:36420600-36435200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:36421400-36428400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr11:36421400-36432400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr11:36421400-36435000	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr11:36421800-36432600	Weak transcription	Brain Anterior Caudate	brain
36	chr11:36422400-36430600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr11:36422800-36430000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:36423000-36428000	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr11:36423000-36428200	Weak transcription	Fetal Thymus	thymus
40	chr11:36423000-36430000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr11:36423000-36432000	Weak transcription	Right Ventricle	heart
42	chr11:36423200-36429000	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr11:36423400-36427400	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr11:36423400-36427600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr11:36423400-36429200	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr11:36423400-36441800	Weak transcription	HMEC	breast
47	chr11:36423600-36427800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr11:36423600-36428200	Weak transcription	Primary B cells from peripheral blood	blood
49	chr11:36423600-36429600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr11:36423600-36429800	Weak transcription	Thymus	Thymus

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