Variant report

Variant	rs11036912
Chromosome Location	chr11:5364450-5364451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	11:5033143-5038367..11:5363591-5368290	Hela-S3	cervix:
2	chr11:5362669..5364774-chr11:5370667..5373143,2	K562	blood:

Variant related genes	Relation type
ENSG00000224300	Chromatin interaction
ENSG00000176239	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10768828	0.84[JPT][hapmap]
rs10768830	0.91[JPT][hapmap];0.85[EUR][1000 genomes]
rs10837853	0.81[CHD][hapmap];0.89[GIH][hapmap]
rs10837867	0.84[JPT][hapmap]
rs10837868	0.84[JPT][hapmap]
rs10837870	0.84[JPT][hapmap]
rs10837871	0.84[JPT][hapmap]
rs10837872	0.81[JPT][hapmap]
rs10837873	0.82[JPT][hapmap]
rs10837874	0.84[JPT][hapmap]
rs11036923	0.82[JPT][hapmap]
rs11036924	0.84[JPT][hapmap]
rs11036925	0.84[JPT][hapmap]
rs11036927	0.84[JPT][hapmap]
rs11036930	0.84[JPT][hapmap]
rs11036936	0.84[JPT][hapmap]
rs11603059	0.82[JPT][hapmap]
rs11604883	0.82[JPT][hapmap]
rs12275713	0.84[JPT][hapmap]
rs12796030	0.84[JPT][hapmap]
rs12801179	0.85[CHD][hapmap];0.84[JPT][hapmap]
rs17270517	0.85[CHD][hapmap];0.84[JPT][hapmap]
rs17270776	0.84[JPT][hapmap]
rs17270818	0.85[CHD][hapmap];0.84[JPT][hapmap]
rs17270832	0.83[JPT][hapmap]
rs17270894	0.85[CHD][hapmap];0.84[JPT][hapmap]
rs17356445	0.83[JPT][hapmap]
rs2467232	0.84[JPT][hapmap]
rs2647598	0.84[JPT][hapmap]
rs2647599	0.84[JPT][hapmap]
rs2647600	0.84[JPT][hapmap]
rs2647601	0.85[CHD][hapmap];0.84[JPT][hapmap]
rs2647606	0.82[JPT][hapmap]
rs2723380	0.84[JPT][hapmap]
rs2723387	0.84[JPT][hapmap]
rs2736553	0.85[CHD][hapmap];0.84[JPT][hapmap]
rs2736555	0.84[JPT][hapmap]
rs2736557	0.84[JPT][hapmap]
rs2736560	0.84[JPT][hapmap]
rs2736561	0.84[JPT][hapmap]
rs2736565	0.84[JPT][hapmap]
rs4255565	0.82[JPT][hapmap]
rs4304811	0.84[JPT][hapmap]
rs4312094	0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4326830	0.84[JPT][hapmap]
rs4495917	0.84[JPT][hapmap]
rs4910551	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4910552	0.82[JPT][hapmap]
rs4910757	0.84[JPT][hapmap]
rs4910760	0.84[JPT][hapmap]
rs4910762	0.84[JPT][hapmap]
rs4910765	0.82[JPT][hapmap]
rs4910770	0.84[JPT][hapmap]
rs4910771	0.82[JPT][hapmap]
rs5024037	0.84[JPT][hapmap]
rs6578611	0.88[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7109909	1.00[JPT][hapmap]
rs7929631	0.84[JPT][hapmap]
rs884222	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524400	chr11:5328361-5416622	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv1048608	chr11:5328516-5645179	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
3	nsv1046068	chr11:5335943-6063742	Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
4	nsv896931	chr11:5357881-5505149	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11036912	TMEM9B	cis	cerebellum	SCAN
rs11036912	UBQLNL	cis	cerebellum	SCAN
rs11036912	ILK	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:5360400-5368200	Strong transcription	K562	blood
2	chr11:5364000-5365400	Enhancers	Hela-S3	cervix
3	chr11:5364000-5367600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links