Variant report

Variant	rs11038540
Chromosome Location	chr11:45575813-45575814
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10160496	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10160816	0.98[ASN][1000 genomes]
rs16938306	0.87[ASN][1000 genomes]
rs17195718	0.98[ASN][1000 genomes]
rs72895225	0.85[ASN][1000 genomes]
rs72895245	0.98[ASN][1000 genomes]
rs72895277	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045831	chr11:45419113-45580407	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11038540	AGBL2	cis	cerebellum	SCAN
rs11038540	CHST1	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45571200-45581600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:45574800-45576200	Enhancers	Fetal Brain Male	brain
3	chr11:45575000-45578600	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr11:45575200-45577200	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr11:45575400-45578400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:45575800-45576400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr11:45575800-45579400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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