Variant report

Variant	rs72895277
Chromosome Location	chr11:45581161-45581162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10160496	0.89[ASN][1000 genomes]
rs10160816	0.91[ASN][1000 genomes]
rs11038540	0.89[ASN][1000 genomes]
rs16938306	0.98[ASN][1000 genomes]
rs17195718	0.91[ASN][1000 genomes]
rs17195752	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17195773	0.81[AMR][1000 genomes]
rs55989803	0.81[AMR][1000 genomes]
rs60227611	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72895245	0.91[ASN][1000 genomes]
rs72899266	0.81[AMR][1000 genomes]
rs72899286	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45571200-45581600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:45576200-45581400	Weak transcription	Fetal Brain Male	brain
3	chr11:45576400-45581400	Weak transcription	Right Ventricle	heart
4	chr11:45577200-45581400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr11:45578600-45581400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:45578600-45581600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:45580600-45582200	Enhancers	Fetal Muscle Trunk	muscle
8	chr11:45580600-45584200	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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