Variant report

Variant	rs55989803
Chromosome Location	chr11:45607820-45607821
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45607423..45609341-chr11:45611214..45612881,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10734533	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10838492	0.87[ASN][1000 genomes]
rs11038579	0.81[ASN][1000 genomes]
rs12574431	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575810	0.97[ASN][1000 genomes]
rs12576823	0.88[ASN][1000 genomes]
rs12577157	0.88[ASN][1000 genomes]
rs12577749	0.81[ASN][1000 genomes]
rs1374750	0.87[ASN][1000 genomes]
rs1562458	0.87[ASN][1000 genomes]
rs1562459	0.88[ASN][1000 genomes]
rs17195752	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17195773	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35198848	0.88[ASN][1000 genomes]
rs4755330	0.81[ASN][1000 genomes]
rs55900308	0.94[ASN][1000 genomes]
rs57159413	0.83[ASN][1000 genomes]
rs60227611	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60865673	0.97[ASN][1000 genomes]
rs72895277	0.81[AMR][1000 genomes]
rs72899266	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72899277	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72899286	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72901205	0.98[ASN][1000 genomes]
rs72904962	0.97[ASN][1000 genomes]
rs72904977	0.97[ASN][1000 genomes]
rs72904985	0.97[ASN][1000 genomes]
rs72910637	0.88[ASN][1000 genomes]
rs72910671	0.87[ASN][1000 genomes]
rs996880	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45607400-45609000	Enhancers	Brain Germinal Matrix	brain
2	chr11:45607800-45608200	Enhancers	Fetal Brain Male	brain

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