Variant report
| Variant | rs12574431 |
|---|---|
| Chromosome Location | chr11:45606628-45606629 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10734533 | 0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10838492 | 0.87[ASN][1000 genomes] |
| rs11038579 | 0.81[ASN][1000 genomes] |
| rs12575810 | 0.97[ASN][1000 genomes] |
| rs12576823 | 0.88[ASN][1000 genomes] |
| rs12577157 | 0.88[ASN][1000 genomes] |
| rs12577749 | 0.81[ASN][1000 genomes] |
| rs1374750 | 0.87[ASN][1000 genomes] |
| rs1562458 | 0.87[ASN][1000 genomes] |
| rs1562459 | 0.88[ASN][1000 genomes] |
| rs17195752 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17195773 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs35198848 | 0.88[ASN][1000 genomes] |
| rs4755330 | 0.81[ASN][1000 genomes] |
| rs55900308 | 0.94[ASN][1000 genomes] |
| rs55989803 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57159413 | 0.83[ASN][1000 genomes] |
| rs60227611 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs60865673 | 0.97[ASN][1000 genomes] |
| rs72899266 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72899277 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72899286 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72901205 | 0.98[ASN][1000 genomes] |
| rs72904962 | 0.97[ASN][1000 genomes] |
| rs72904977 | 0.97[ASN][1000 genomes] |
| rs72904985 | 0.97[ASN][1000 genomes] |
| rs72910637 | 0.88[ASN][1000 genomes] |
| rs72910671 | 0.87[ASN][1000 genomes] |
| rs996880 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv897310 | chr11:45487041-45631953 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:3)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs12574431 | ACP2 | cis | parietal | SCAN |
| rs12574431 | MTCH2 | cis | parietal | SCAN |
| rs12574431 | LRP4 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:45600200-45607400 | Weak transcription | Brain Germinal Matrix | brain |
