Variant report

Variant	rs10734533
Chromosome Location	chr11:45630682-45630683
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10838492	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11038578	0.90[ASN][1000 genomes]
rs11038579	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11038580	0.89[ASN][1000 genomes]
rs12574417	0.90[ASN][1000 genomes]
rs12574431	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12575810	0.88[ASN][1000 genomes]
rs12576823	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577157	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12577749	0.93[ASN][1000 genomes]
rs1374750	0.99[ASN][1000 genomes]
rs1562458	0.99[ASN][1000 genomes]
rs1562459	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17195752	0.85[ASN][1000 genomes]
rs17195773	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35198848	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755330	0.93[ASN][1000 genomes]
rs55900308	0.86[ASN][1000 genomes]
rs55989803	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57159413	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60227611	0.85[ASN][1000 genomes]
rs60865673	0.88[ASN][1000 genomes]
rs72896725	0.90[ASN][1000 genomes]
rs72899266	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72899277	0.85[ASN][1000 genomes]
rs72899286	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72901205	0.87[ASN][1000 genomes]
rs72904962	0.88[ASN][1000 genomes]
rs72904977	0.88[ASN][1000 genomes]
rs72904985	0.88[ASN][1000 genomes]
rs72910637	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910671	0.99[ASN][1000 genomes]
rs72910683	0.90[ASN][1000 genomes]
rs996880	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10734533	F2	cis	cerebellum	SCAN
rs10734533	LRP4	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45628400-45639000	Weak transcription	Fetal Muscle Leg	muscle
2	chr11:45628600-45641600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:45629400-45631800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr11:45630000-45638800	Weak transcription	Left Ventricle	heart
5	chr11:45630200-45631600	Weak transcription	Placenta	Placenta
6	chr11:45630400-45631600	Weak transcription	Fetal Lung	lung
7	chr11:45630600-45630800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived

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