Variant report

Variant	rs11038580
Chromosome Location	chr11:45640697-45640698
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10734533	0.89[ASN][1000 genomes]
rs10838492	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11038578	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11038579	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12574417	0.93[ASN][1000 genomes]
rs12576823	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12577157	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12577749	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1374750	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1562458	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1562459	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs35198848	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4755330	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57159413	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs72896725	0.93[ASN][1000 genomes]
rs72910637	0.89[ASN][1000 genomes]
rs72910671	0.87[ASN][1000 genomes]
rs72910683	0.93[ASN][1000 genomes]
rs996880	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11038580	ALX4	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45628600-45641600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:45633800-45641800	Weak transcription	Gastric	stomach
3	chr11:45639800-45641800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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