Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10734533	0.85[ASN][1000 genomes]
rs10838492	0.84[ASN][1000 genomes]
rs12574431	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12575810	0.94[ASN][1000 genomes]
rs12576823	0.85[ASN][1000 genomes]
rs12577157	0.85[ASN][1000 genomes]
rs1374750	0.84[ASN][1000 genomes]
rs1562458	0.84[ASN][1000 genomes]
rs1562459	0.85[ASN][1000 genomes]
rs17195752	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17195773	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35198848	0.85[ASN][1000 genomes]
rs55900308	0.91[ASN][1000 genomes]
rs55989803	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60227611	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60865673	0.94[ASN][1000 genomes]
rs72899266	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899286	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901205	0.95[ASN][1000 genomes]
rs72904962	0.94[ASN][1000 genomes]
rs72904977	0.94[ASN][1000 genomes]
rs72904985	0.94[ASN][1000 genomes]
rs72910637	0.85[ASN][1000 genomes]
rs72910671	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45585800-45598000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:45591600-45598800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:45596800-45598400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:45597000-45597800	Weak transcription	Brain Germinal Matrix	brain
5	chr11:45597200-45599000	Enhancers	Osteobl	bone

Quick Search: