Variant report

Variant	rs11038864
Chromosome Location	chr11:46349103-46349104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46347230..46349225-chr11:46352449..46354877,2	K562	blood:
2	chr11:46341667..46343231-chr11:46348758..46351326,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149091	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12576115	0.83[AFR][1000 genomes]
rs2288249	0.80[ASN][1000 genomes]
rs3740977	0.81[AFR][1000 genomes]
rs5028615	0.80[ASN][1000 genomes]
rs59319338	0.82[AFR][1000 genomes]
rs61882674	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61882682	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554201	chr11:46281835-46422686	Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv825867	chr11:46303184-46425613	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv1797501	chr11:46315437-46402521	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv1811345	chr11:46317062-46438072	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv554202	chr11:46334239-46469900	Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46330200-46349400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:46338800-46351400	Weak transcription	Fetal Heart	heart
3	chr11:46342000-46351000	Weak transcription	Primary T cells from cord blood	blood
4	chr11:46342400-46352000	Weak transcription	Right Ventricle	heart
5	chr11:46342600-46352200	Weak transcription	Ovary	ovary
6	chr11:46342600-46353200	Weak transcription	Spleen	Spleen
7	chr11:46343200-46353800	Weak transcription	Pancreas	Pancrea
8	chr11:46343400-46351200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:46343800-46349200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr11:46343800-46349400	Weak transcription	NHLF	lung
11	chr11:46344000-46351400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:46344000-46352000	Weak transcription	Left Ventricle	heart
13	chr11:46344000-46354000	Weak transcription	Gastric	stomach
14	chr11:46344200-46349600	Weak transcription	NHDF-Ad	bronchial
15	chr11:46344200-46351400	Weak transcription	HSMMtube	muscle
16	chr11:46344800-46349400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr11:46344800-46351000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr11:46344800-46351600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:46345000-46349400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:46345000-46349600	Weak transcription	NH-A	brain
21	chr11:46345000-46351400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:46345200-46349200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:46345200-46352000	Weak transcription	HSMM	muscle
24	chr11:46345200-46352200	Weak transcription	Adipose Nuclei	Adipose
25	chr11:46346200-46349200	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr11:46346200-46351000	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr11:46346600-46349200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:46347600-46351000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:46348000-46349600	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr11:46348200-46349600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:46348200-46349800	Enhancers	Placenta	Placenta
32	chr11:46348400-46351000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr11:46348400-46351200	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr11:46348400-46351200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:46348400-46351400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr11:46348600-46349400	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr11:46348600-46350600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr11:46348800-46349200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:46348800-46351200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr11:46348800-46351200	Weak transcription	Fetal Stomach	stomach
41	chr11:46349000-46349200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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