Variant report

Variant	rs61882674
Chromosome Location	chr11:46352266-46352267
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:46351643-46352416	H1-neurons	neurons:	n/a	n/a
2	SIN3A	chr11:46352140-46352516	H1-hESC	embryonic stem cell:	n/a	chr11:46352343-46352356

No.	Distal block	Cell Line	Cell type
1	chr11:46337829..46340828-chr11:46350846..46352453,2	K562	blood:
2	chr11:46263634..46265173-chr11:46350706..46352821,2	MCF-7	breast:
3	chr11:46333947..46338346-chr11:46350812..46353787,3	MCF-7	breast:

Variant related genes	Relation type
DGKZ	TF binding region
ENSG00000157613	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10838602	0.80[EUR][1000 genomes]
rs11038864	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11038897	0.82[EUR][1000 genomes]
rs11038900	0.81[EUR][1000 genomes]
rs12283172	0.84[EUR][1000 genomes]
rs12285419	0.83[EUR][1000 genomes]
rs12573978	0.84[EUR][1000 genomes]
rs12574250	0.84[EUR][1000 genomes]
rs12575519	0.82[EUR][1000 genomes]
rs12576115	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12576317	0.84[EUR][1000 genomes]
rs12576359	0.80[EUR][1000 genomes]
rs12577142	0.81[EUR][1000 genomes]
rs12578042	0.81[EUR][1000 genomes]
rs1472001	0.82[EUR][1000 genomes]
rs1489192	0.81[EUR][1000 genomes]
rs16938506	0.82[EUR][1000 genomes]
rs2046768	0.84[EUR][1000 genomes]
rs2067482	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2171667	0.82[EUR][1000 genomes]
rs2171668	0.82[EUR][1000 genomes]
rs2279465	0.84[EUR][1000 genomes]
rs2288249	0.82[ASN][1000 genomes]
rs2291487	0.84[EUR][1000 genomes]
rs2864072	0.84[EUR][1000 genomes]
rs2864076	0.82[EUR][1000 genomes]
rs2902858	0.81[EUR][1000 genomes]
rs34406563	0.81[EUR][1000 genomes]
rs35652107	0.81[ASN][1000 genomes]
rs3740974	0.84[EUR][1000 genomes]
rs3740977	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3802888	0.81[EUR][1000 genomes]
rs5028615	0.82[ASN][1000 genomes]
rs57535407	0.84[EUR][1000 genomes]
rs58147945	0.81[EUR][1000 genomes]
rs59319338	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61882678	0.90[EUR][1000 genomes]
rs61882682	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61882683	0.87[AMR][1000 genomes]
rs61882691	0.82[EUR][1000 genomes]
rs61882701	0.84[EUR][1000 genomes]
rs61882702	0.84[EUR][1000 genomes]
rs61882706	0.83[EUR][1000 genomes]
rs61882709	0.82[EUR][1000 genomes]
rs61882710	0.84[EUR][1000 genomes]
rs61882711	0.84[EUR][1000 genomes]
rs61882712	0.82[EUR][1000 genomes]
rs61882746	0.81[EUR][1000 genomes]
rs61882748	0.84[EUR][1000 genomes]
rs61882750	0.81[EUR][1000 genomes]
rs6485682	0.82[EUR][1000 genomes]
rs7112229	0.82[EUR][1000 genomes]
rs7127529	0.81[EUR][1000 genomes]
rs7130141	0.81[EUR][1000 genomes]
rs7930103	0.82[EUR][1000 genomes]
rs7936413	0.84[EUR][1000 genomes]
rs7946705	0.84[EUR][1000 genomes]
rs7951579	0.82[EUR][1000 genomes]
rs7951870	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554201	chr11:46281835-46422686	Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv825867	chr11:46303184-46425613	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv1797501	chr11:46315437-46402521	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv1811345	chr11:46317062-46438072	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv554202	chr11:46334239-46469900	Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv897316	chr11:46349631-46417815	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46342600-46353200	Weak transcription	Spleen	Spleen
2	chr11:46343200-46353800	Weak transcription	Pancreas	Pancrea
3	chr11:46344000-46354000	Weak transcription	Gastric	stomach
4	chr11:46349800-46357400	Weak transcription	Hela-S3	cervix
5	chr11:46350800-46353600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:46350800-46353800	Enhancers	Fetal Thymus	thymus
7	chr11:46351000-46352400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:46351000-46352400	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr11:46351000-46352600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr11:46351200-46352400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr11:46351200-46352400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr11:46351200-46352600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
13	chr11:46351200-46352600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr11:46351200-46352600	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
15	chr11:46351200-46353000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:46351200-46353400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:46351200-46353600	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
18	chr11:46351200-46354000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:46351200-46354000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:46351200-46354000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:46351200-46354000	Bivalent Enhancer	Fetal Muscle Leg	muscle
22	chr11:46351200-46354200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
23	chr11:46351400-46352400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:46351400-46352400	Enhancers	HSMMtube	muscle
25	chr11:46351400-46352600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr11:46351400-46353000	Bivalent Enhancer	Fetal Stomach	stomach
27	chr11:46351400-46353800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
28	chr11:46351400-46354000	Enhancers	Primary hematopoietic stem cells	blood
29	chr11:46351400-46354000	Enhancers	Thymus	Thymus
30	chr11:46351600-46352400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
31	chr11:46351600-46352400	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
32	chr11:46351600-46352400	Bivalent Enhancer	Fetal Heart	heart
33	chr11:46351600-46352600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr11:46351600-46352800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:46351600-46352800	Flanking Active TSS	Dnd41	blood
36	chr11:46351600-46353000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:46351600-46353000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
38	chr11:46351600-46353200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr11:46351600-46353600	Enhancers	Placenta	Placenta
40	chr11:46351600-46353800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
41	chr11:46351600-46353800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
42	chr11:46351600-46354000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
43	chr11:46351600-46354200	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr11:46351600-46354400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
45	chr11:46351800-46352400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
46	chr11:46351800-46352400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
47	chr11:46351800-46352400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr11:46351800-46352600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:46351800-46352600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:46351800-46352600	Bivalent Enhancer	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links