Variant report

Variant	rs7946705
Chromosome Location	chr11:46421158-46421159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46411065..46412828-chr11:46420913..46422705,2	MCF-7	breast:

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10160701	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10838602	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11038897	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11038900	0.96[EUR][1000 genomes]
rs11038906	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11038914	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11038919	0.95[EUR][1000 genomes]
rs11038927	0.94[EUR][1000 genomes]
rs11819869	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12272795	0.92[EUR][1000 genomes]
rs12283172	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12292425	0.92[EUR][1000 genomes]
rs12295266	0.93[EUR][1000 genomes]
rs12573978	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12574250	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12574668	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575519	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12576115	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12576317	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12576359	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12577142	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12578042	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1472001	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1489192	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16938506	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2046768	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2067482	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2171667	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2171668	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2279465	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2291487	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2864072	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2864076	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2902858	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34406563	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35324223	0.84[EUR][1000 genomes]
rs35623865	0.91[EUR][1000 genomes]
rs3740974	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3740977	0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3802888	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3809047	0.81[ASN][1000 genomes]
rs4307676	0.87[EUR][1000 genomes]
rs55657382	0.91[EUR][1000 genomes]
rs55661562	0.91[EUR][1000 genomes]
rs55896955	0.80[EUR][1000 genomes]
rs57535407	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58147945	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59319338	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60722866	0.88[EUR][1000 genomes]
rs60932698	0.89[EUR][1000 genomes]
rs61882674	0.84[EUR][1000 genomes]
rs61882678	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61882682	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61882683	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61882691	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882701	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882702	1.00[EUR][1000 genomes]
rs61882706	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61882709	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61882710	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61882711	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61882712	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61882720	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882743	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882746	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882748	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882750	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882756	0.91[EUR][1000 genomes]
rs61882757	0.93[EUR][1000 genomes]
rs61882758	0.93[EUR][1000 genomes]
rs61884262	0.85[EUR][1000 genomes]
rs61884264	0.91[EUR][1000 genomes]
rs61884271	0.89[EUR][1000 genomes]
rs61884273	0.87[EUR][1000 genomes]
rs61884274	0.87[EUR][1000 genomes]
rs61884292	0.80[EUR][1000 genomes]
rs6485682	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6485685	0.91[EUR][1000 genomes]
rs7108770	0.89[EUR][1000 genomes]
rs7109698	0.81[EUR][1000 genomes]
rs7112229	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7122039	0.92[EUR][1000 genomes]
rs7125907	0.92[EUR][1000 genomes]
rs7126316	0.86[EUR][1000 genomes]
rs7126343	0.87[EUR][1000 genomes]
rs7127529	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7128092	0.86[EUR][1000 genomes]
rs7130141	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73449983	0.93[EUR][1000 genomes]
rs7481312	0.94[EUR][1000 genomes]
rs7484002	0.91[EUR][1000 genomes]
rs7924401	0.92[EUR][1000 genomes]
rs7930103	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7932866	0.86[EUR][1000 genomes]
rs7936413	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7951579	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7951870	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs876701	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554201	chr11:46281835-46422686	Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv825867	chr11:46303184-46425613	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv1811345	chr11:46317062-46438072	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv554202	chr11:46334239-46469900	Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv309	chr11:46399678-46440503	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv1050614	chr11:46414720-46496732	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46413000-46425000	Weak transcription	Fetal Heart	heart
2	chr11:46414200-46429000	Weak transcription	Hela-S3	cervix
3	chr11:46414200-46432000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:46414600-46425800	Weak transcription	HSMM	muscle
5	chr11:46414600-46429200	Weak transcription	HMEC	breast
6	chr11:46414800-46424200	Weak transcription	Right Atrium	heart
7	chr11:46414800-46424600	Weak transcription	Psoas Muscle	Psoas
8	chr11:46414800-46426200	Weak transcription	NH-A	brain
9	chr11:46414800-46428600	Weak transcription	A549	lung
10	chr11:46414800-46429200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr11:46414800-46436800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:46415000-46424800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr11:46415000-46428800	Weak transcription	Stomach Mucosa	stomach
14	chr11:46415000-46429000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:46415000-46429200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr11:46415000-46432800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr11:46415200-46424400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr11:46415200-46424600	Weak transcription	Fetal Kidney	kidney
19	chr11:46415200-46426000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr11:46415200-46426800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:46415200-46430600	Weak transcription	K562	blood
22	chr11:46415400-46423400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:46416200-46429000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr11:46416200-46429800	Weak transcription	HUVEC	blood vessel
25	chr11:46416400-46428400	Weak transcription	Small Intestine	intestine
26	chr11:46416400-46429200	Weak transcription	NHDF-Ad	bronchial
27	chr11:46417000-46421800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr11:46417000-46421800	Strong transcription	Duodenum Mucosa	Duodenum
29	chr11:46417000-46424600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr11:46417000-46435800	Strong transcription	Fetal Intestine Small	intestine
31	chr11:46417000-46444400	Strong transcription	Fetal Stomach	stomach
32	chr11:46417200-46439600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:46417400-46427200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:46417400-46432200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:46417400-46432600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:46417600-46423800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr11:46417600-46427600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr11:46417800-46463400	Weak transcription	Fetal Brain Male	brain
39	chr11:46418200-46422600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr11:46419200-46424400	Weak transcription	Fetal Lung	lung
41	chr11:46419200-46431600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr11:46419400-46421400	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr11:46419400-46422600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr11:46419400-46425000	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr11:46419400-46425000	Weak transcription	Fetal Brain Female	brain
46	chr11:46419400-46426600	Weak transcription	Colon Smooth Muscle	Colon
47	chr11:46419400-46428800	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr11:46419600-46422400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:46419600-46424200	Weak transcription	Primary B cells from peripheral blood	blood
50	chr11:46419600-46424400	Weak transcription	HSMMtube	muscle

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