Variant report

Variant	rs61884262
Chromosome Location	chr11:46631299-46631300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46631023..46632699-chr11:47437106..47439658,2	K562	blood:
2	chr11:46631028..46633325-chr11:46640915..46642885,2	K562	blood:
3	chr11:46614146..46617219-chr11:46630007..46632341,3	MCF-7	breast:
4	chr11:46629685..46633995-chr11:46635232..46640921,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180423	Chromatin interaction
ENSG00000175224	Chromatin interaction
ENSG00000110497	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10160701	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10838602	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11038897	0.85[EUR][1000 genomes]
rs11038900	0.83[EUR][1000 genomes]
rs11038906	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11038914	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11038919	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11038927	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11819869	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12272795	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12283172	0.85[EUR][1000 genomes]
rs12292425	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12295266	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12573978	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12574250	0.82[EUR][1000 genomes]
rs12574668	0.82[EUR][1000 genomes]
rs12575519	0.83[EUR][1000 genomes]
rs12576115	0.81[EUR][1000 genomes]
rs12576317	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12576359	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12577142	0.83[EUR][1000 genomes]
rs12578042	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1472001	0.83[EUR][1000 genomes]
rs1489192	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16938506	0.85[EUR][1000 genomes]
rs2046768	0.85[EUR][1000 genomes]
rs2067482	0.85[EUR][1000 genomes]
rs2171667	0.85[EUR][1000 genomes]
rs2171668	0.85[EUR][1000 genomes]
rs2279465	0.85[EUR][1000 genomes]
rs2291487	0.85[EUR][1000 genomes]
rs2864072	0.85[EUR][1000 genomes]
rs2864076	0.85[EUR][1000 genomes]
rs2902858	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34406563	0.82[EUR][1000 genomes]
rs35623865	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740974	0.85[EUR][1000 genomes]
rs3740977	0.84[EUR][1000 genomes]
rs3802888	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4307676	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4423142	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55657382	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55661562	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55896955	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57535407	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58147945	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59319338	0.82[EUR][1000 genomes]
rs60722866	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60932698	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882682	0.83[EUR][1000 genomes]
rs61882691	0.85[EUR][1000 genomes]
rs61882701	0.85[EUR][1000 genomes]
rs61882702	0.85[EUR][1000 genomes]
rs61882706	0.84[EUR][1000 genomes]
rs61882709	0.85[EUR][1000 genomes]
rs61882710	0.85[EUR][1000 genomes]
rs61882711	0.85[EUR][1000 genomes]
rs61882712	0.83[EUR][1000 genomes]
rs61882720	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882743	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882746	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882748	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882750	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882756	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882757	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882758	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61884264	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884271	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884273	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61884274	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61884292	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6485682	0.85[EUR][1000 genomes]
rs6485685	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7108770	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109698	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7112229	0.83[EUR][1000 genomes]
rs7122039	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125907	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7126316	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7126343	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7127529	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7128092	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7130141	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73449983	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7481312	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7484002	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924401	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930103	0.83[EUR][1000 genomes]
rs7932866	0.84[AMR][1000 genomes]
rs7936413	0.85[EUR][1000 genomes]
rs7946705	0.85[EUR][1000 genomes]
rs7951579	0.85[EUR][1000 genomes]
rs7951870	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044225	chr11:46472580-46771102	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv541030	chr11:46472580-46771102	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1046990	chr11:46501436-46669636	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv541031	chr11:46501436-46669636	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv897321	chr11:46515902-46673344	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46615600-46636800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:46615800-46637000	Weak transcription	Esophagus	oesophagus
3	chr11:46615800-46638400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:46616000-46637000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:46616000-46638400	Weak transcription	Aorta	Aorta
6	chr11:46616200-46633000	Weak transcription	Placenta	Placenta
7	chr11:46616200-46633400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:46616200-46633400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:46616200-46633400	Weak transcription	Fetal Brain Female	brain
10	chr11:46616200-46633400	Weak transcription	NHLF	lung
11	chr11:46616200-46633600	Weak transcription	Brain Germinal Matrix	brain
12	chr11:46616200-46634800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr11:46616200-46637000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:46616200-46637200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:46616200-46637200	Weak transcription	HMEC	breast
16	chr11:46616200-46637400	Weak transcription	Right Ventricle	heart
17	chr11:46616200-46637400	Weak transcription	Thymus	Thymus
18	chr11:46616200-46638000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:46616200-46638000	Weak transcription	Right Atrium	heart
20	chr11:46616200-46638400	Weak transcription	Spleen	Spleen
21	chr11:46616400-46633000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr11:46616400-46633200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr11:46616400-46633200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr11:46616400-46633400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:46616400-46633400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr11:46616400-46637000	Weak transcription	A549	lung
27	chr11:46616400-46637400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr11:46616400-46637600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:46616400-46637600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr11:46616400-46637800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr11:46616400-46638000	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr11:46616600-46633000	Weak transcription	Hela-S3	cervix
33	chr11:46619200-46638000	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:46619400-46632800	Weak transcription	Stomach Mucosa	stomach
35	chr11:46619400-46633600	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr11:46619400-46638000	Weak transcription	Small Intestine	intestine
37	chr11:46619600-46633400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:46619600-46637200	Weak transcription	HSMM	muscle
39	chr11:46619800-46637400	Weak transcription	NH-A	brain
40	chr11:46622800-46637200	Weak transcription	NHDF-Ad	bronchial
41	chr11:46623000-46637200	Weak transcription	Osteobl	bone
42	chr11:46623600-46633200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:46623800-46633400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr11:46623800-46637800	Weak transcription	Fetal Brain Male	brain
45	chr11:46625400-46632800	Weak transcription	Left Ventricle	heart
46	chr11:46625400-46633000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr11:46625400-46633000	Weak transcription	Duodenum Mucosa	Duodenum
48	chr11:46625400-46633000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr11:46625400-46633400	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr11:46625400-46633400	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links