Variant report

Variant	rs61884271
Chromosome Location	chr11:46654404-46654405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10160701	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10838602	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11038897	0.89[EUR][1000 genomes]
rs11038900	0.87[EUR][1000 genomes]
rs11038906	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11038914	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11038919	0.90[EUR][1000 genomes]
rs11038927	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11038974	0.82[EUR][1000 genomes]
rs11819869	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12272795	0.85[EUR][1000 genomes]
rs12283172	0.89[EUR][1000 genomes]
rs12292425	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12295266	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12573978	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12574250	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12574259	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12574668	0.86[EUR][1000 genomes]
rs12574918	0.84[EUR][1000 genomes]
rs12575519	0.87[EUR][1000 genomes]
rs12576115	0.85[EUR][1000 genomes]
rs12576317	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12576359	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12577142	0.86[EUR][1000 genomes]
rs12578042	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1472001	0.87[EUR][1000 genomes]
rs1489192	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16938506	0.89[EUR][1000 genomes]
rs2046768	0.89[EUR][1000 genomes]
rs2067482	0.89[EUR][1000 genomes]
rs2171667	0.89[EUR][1000 genomes]
rs2171668	0.89[EUR][1000 genomes]
rs2279465	0.89[EUR][1000 genomes]
rs2291487	0.89[EUR][1000 genomes]
rs2864072	0.89[EUR][1000 genomes]
rs2864076	0.89[EUR][1000 genomes]
rs2902858	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34406563	0.86[EUR][1000 genomes]
rs35623865	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740974	0.89[EUR][1000 genomes]
rs3740977	0.88[EUR][1000 genomes]
rs3802888	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4307676	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4319473	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4423142	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55657382	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55661562	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55896955	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56349329	0.87[EUR][1000 genomes]
rs57535407	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57739486	0.84[EUR][1000 genomes]
rs57744667	0.87[EUR][1000 genomes]
rs58147945	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59319338	0.86[EUR][1000 genomes]
rs60722866	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60932698	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882682	0.87[EUR][1000 genomes]
rs61882683	0.83[EUR][1000 genomes]
rs61882691	0.89[EUR][1000 genomes]
rs61882701	0.89[EUR][1000 genomes]
rs61882702	0.89[EUR][1000 genomes]
rs61882706	0.88[EUR][1000 genomes]
rs61882709	0.89[EUR][1000 genomes]
rs61882710	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61882711	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61882712	0.87[EUR][1000 genomes]
rs61882720	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882743	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882746	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882748	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882750	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882756	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882757	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882758	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61884262	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884264	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884273	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61884274	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61884292	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61884295	0.87[EUR][1000 genomes]
rs61884301	0.83[EUR][1000 genomes]
rs6485682	0.89[EUR][1000 genomes]
rs6485685	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7108770	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109698	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7112229	0.87[EUR][1000 genomes]
rs7122039	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7125907	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7126316	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7126343	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7127529	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7128092	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7130141	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73449983	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7481312	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7484002	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924401	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926389	0.85[EUR][1000 genomes]
rs7930103	0.87[EUR][1000 genomes]
rs7936413	0.89[EUR][1000 genomes]
rs7946705	0.89[EUR][1000 genomes]
rs7951579	0.89[EUR][1000 genomes]
rs7951870	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044225	chr11:46472580-46771102	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv541030	chr11:46472580-46771102	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1046990	chr11:46501436-46669636	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv541031	chr11:46501436-46669636	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv897321	chr11:46515902-46673344	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46640000-46664200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:46640000-46670800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:46640600-46667200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:46640600-46667200	Weak transcription	Psoas Muscle	Psoas
5	chr11:46640800-46664400	Weak transcription	GM12878-XiMat	blood
6	chr11:46640800-46670600	Weak transcription	Fetal Heart	heart
7	chr11:46640800-46670800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:46640800-46673000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr11:46641000-46657000	Strong transcription	Fetal Stomach	stomach
10	chr11:46641400-46667400	Weak transcription	Esophagus	oesophagus
11	chr11:46641600-46655800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:46641600-46662600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr11:46641600-46663800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr11:46641800-46660800	Weak transcription	Stomach Mucosa	stomach
15	chr11:46641800-46663200	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr11:46641800-46680800	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr11:46642000-46685000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:46642600-46654600	Strong transcription	Fetal Intestine Large	intestine
19	chr11:46643000-46655800	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr11:46643600-46690800	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr11:46644600-46667400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr11:46644800-46666800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:46647200-46667400	Weak transcription	Pancreas	Pancrea
24	chr11:46647200-46670800	Weak transcription	Aorta	Aorta
25	chr11:46647400-46666600	Weak transcription	A549	lung
26	chr11:46647400-46670800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr11:46647600-46667400	Weak transcription	Right Ventricle	heart
28	chr11:46647600-46670200	Weak transcription	NHLF	lung
29	chr11:46649800-46655800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr11:46650400-46662200	Strong transcription	Fetal Thymus	thymus
31	chr11:46650600-46654600	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr11:46650600-46655600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr11:46650600-46655600	Strong transcription	Duodenum Mucosa	Duodenum
34	chr11:46650800-46655800	Strong transcription	Left Ventricle	heart
35	chr11:46650800-46657000	Weak transcription	Brain Substantia Nigra	brain
36	chr11:46650800-46669600	Weak transcription	Right Atrium	heart
37	chr11:46651000-46655800	Strong transcription	Dnd41	blood
38	chr11:46651000-46663400	Weak transcription	Spleen	Spleen
39	chr11:46651200-46654600	Strong transcription	Adipose Nuclei	Adipose
40	chr11:46651600-46654800	Strong transcription	Sigmoid Colon	Sigmoid Colon
41	chr11:46652000-46659000	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr11:46652000-46667400	Weak transcription	Gastric	stomach
43	chr11:46652200-46666000	Weak transcription	Osteobl	bone
44	chr11:46652200-46678400	Weak transcription	Fetal Brain Male	brain
45	chr11:46652200-46695600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr11:46652400-46657200	Weak transcription	Brain Anterior Caudate	brain
47	chr11:46652400-46658200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr11:46652400-46660800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr11:46652400-46664600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr11:46652400-46667000	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links