Variant report

Variant	rs61882756
Chromosome Location	chr11:46610283-46610284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46607666..46610984-chr11:46636142..46639062,4	K562	blood:
2	chr11:46589306..46592044-chr11:46609150..46612036,2	MCF-7	breast:
3	chr11:46609404..46611935-chr11:46638040..46640880,2	MCF-7	breast:
4	chr11:46608389..46610694-chr11:46636142..46638547,2	K562	blood:
5	chr11:46609320..46612580-chr11:46612925..46615505,3	K562	blood:

Variant related genes	Relation type
ENSG00000110497	Chromatin interaction
ENSG00000175224	Chromatin interaction
ENSG00000180423	Chromatin interaction

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10160701	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10838602	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11038897	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11038900	0.89[EUR][1000 genomes]
rs11038906	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11038914	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11038919	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11038927	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11819869	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12272795	0.87[EUR][1000 genomes]
rs12283172	0.91[EUR][1000 genomes]
rs12292425	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12295266	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12573978	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12574250	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12574259	0.80[EUR][1000 genomes]
rs12574668	0.88[EUR][1000 genomes]
rs12575519	0.89[EUR][1000 genomes]
rs12576115	0.87[EUR][1000 genomes]
rs12576317	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12576359	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12577142	0.88[EUR][1000 genomes]
rs12578042	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1472001	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1489192	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16938506	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17197116	0.84[ASN][1000 genomes]
rs2046768	0.91[EUR][1000 genomes]
rs2067482	0.91[EUR][1000 genomes]
rs2171667	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2171668	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2279465	0.91[EUR][1000 genomes]
rs2291487	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2864072	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2864076	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2902858	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34406563	0.87[EUR][1000 genomes]
rs35623865	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3740974	0.91[EUR][1000 genomes]
rs3740977	0.90[EUR][1000 genomes]
rs3802888	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4307676	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4423142	0.85[EUR][1000 genomes]
rs55657382	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55661562	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55750336	0.84[ASN][1000 genomes]
rs55896955	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56349329	0.82[EUR][1000 genomes]
rs57535407	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57744667	0.82[EUR][1000 genomes]
rs58147945	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59319338	0.88[EUR][1000 genomes]
rs60722866	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60932698	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61882678	0.83[EUR][1000 genomes]
rs61882682	0.89[EUR][1000 genomes]
rs61882683	0.84[EUR][1000 genomes]
rs61882691	0.91[EUR][1000 genomes]
rs61882701	0.91[EUR][1000 genomes]
rs61882702	0.91[EUR][1000 genomes]
rs61882706	0.90[EUR][1000 genomes]
rs61882709	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882710	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882711	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882712	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61882720	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61882743	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61882746	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61882748	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61882750	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61882757	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882758	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884262	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61884264	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61884271	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61884273	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61884274	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61884292	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61884295	0.82[EUR][1000 genomes]
rs6485682	0.91[EUR][1000 genomes]
rs6485685	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7108770	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7109698	0.85[EUR][1000 genomes]
rs7112229	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7122039	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7125907	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126316	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7126343	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7127529	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7128092	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7130141	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73449983	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7481312	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7484002	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs756343	0.84[ASN][1000 genomes]
rs7924401	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7926389	0.80[EUR][1000 genomes]
rs7930103	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7932866	0.81[EUR][1000 genomes]
rs7936413	0.91[EUR][1000 genomes]
rs7946705	0.91[EUR][1000 genomes]
rs7951579	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7951870	0.90[EUR][1000 genomes]
rs876701	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044225	chr11:46472580-46771102	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv541030	chr11:46472580-46771102	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1046990	chr11:46501436-46669636	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv541031	chr11:46501436-46669636	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv897321	chr11:46515902-46673344	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46568800-46611000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:46568800-46612600	Weak transcription	Brain Germinal Matrix	brain
3	chr11:46583000-46613000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:46583200-46611800	Weak transcription	Thymus	Thymus
5	chr11:46583200-46612200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:46583200-46613800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr11:46583600-46612400	Weak transcription	Primary B cells from cord blood	blood
8	chr11:46584000-46613600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr11:46586600-46613800	Weak transcription	NH-A	brain
10	chr11:46587800-46613200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:46589000-46614000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:46589600-46613000	Weak transcription	Fetal Muscle Leg	muscle
13	chr11:46589600-46613000	Weak transcription	Fetal Stomach	stomach
14	chr11:46589600-46614000	Weak transcription	Fetal Intestine Large	intestine
15	chr11:46591400-46611000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr11:46591800-46612200	Weak transcription	Aorta	Aorta
17	chr11:46592600-46612200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr11:46592600-46612200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:46592800-46612200	Weak transcription	NHEK	skin
20	chr11:46592800-46612600	Weak transcription	Fetal Lung	lung
21	chr11:46592800-46613600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:46593000-46612200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr11:46593000-46612600	Weak transcription	HSMMtube	muscle
24	chr11:46593200-46610600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:46593200-46612200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr11:46594000-46612200	Weak transcription	Fetal Kidney	kidney
27	chr11:46594200-46612200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr11:46596800-46610400	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr11:46596800-46610600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr11:46596800-46611600	Weak transcription	Ovary	ovary
31	chr11:46596800-46612200	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr11:46596800-46614000	Weak transcription	Primary B cells from peripheral blood	blood
33	chr11:46597000-46611800	Weak transcription	Psoas Muscle	Psoas
34	chr11:46597000-46613000	Weak transcription	Lung	lung
35	chr11:46598000-46612200	Weak transcription	Osteobl	bone
36	chr11:46598200-46612000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:46598200-46612800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:46598200-46612800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr11:46598200-46614000	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr11:46598400-46612800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:46599000-46614200	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr11:46599800-46610600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:46600200-46611200	Weak transcription	Fetal Thymus	thymus
44	chr11:46600600-46612600	Weak transcription	Fetal Brain Female	brain
45	chr11:46601400-46612400	Weak transcription	HMEC	breast
46	chr11:46601600-46612600	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr11:46602200-46610800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:46602400-46610400	Weak transcription	Hela-S3	cervix
49	chr11:46602600-46610600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr11:46602600-46610800	Weak transcription	Brain Angular Gyrus	brain

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