Variant report

Variant	rs11038866
Chromosome Location	chr11:46355932-46355933
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46328323..46330556-chr11:46354487..46356134,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10838596	0.87[CEU][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11038871	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11038910	0.95[CEU][hapmap]
rs12273290	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1317826	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17787804	0.95[CEU][hapmap]
rs3740973	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs3802890	1.00[CEU][hapmap]
rs4565870	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7476	0.83[CEU][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7949282	1.00[CEU][hapmap]
rs7949371	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554201	chr11:46281835-46422686	Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv825867	chr11:46303184-46425613	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv1797501	chr11:46315437-46402521	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv1811345	chr11:46317062-46438072	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv554202	chr11:46334239-46469900	Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv897316	chr11:46349631-46417815	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
7	esv3345003	chr11:46353526-46356074	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46349800-46357400	Weak transcription	Hela-S3	cervix
2	chr11:46353200-46356000	Enhancers	Spleen	Spleen
3	chr11:46354000-46356400	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr11:46355000-46356000	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
5	chr11:46355000-46356000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
6	chr11:46355000-46356000	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
7	chr11:46355000-46356000	Enhancers	Lung	lung
8	chr11:46355000-46356400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
9	chr11:46355000-46358000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
10	chr11:46355200-46356000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:46355200-46356200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr11:46355200-46356400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
13	chr11:46355200-46356400	Bivalent Enhancer	Primary B cells from cord blood	blood
14	chr11:46355200-46356400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
15	chr11:46355200-46356400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr11:46355200-46356400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
17	chr11:46355200-46358600	Flanking Active TSS	Primary T cells from cord blood	blood
18	chr11:46355200-46360200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:46355200-46360200	Weak transcription	Pancreas	Pancrea
20	chr11:46355200-46360600	Weak transcription	Gastric	stomach
21	chr11:46355400-46356000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:46355400-46356000	Enhancers	Primary hematopoietic stem cells	blood
23	chr11:46355400-46356000	Bivalent Enhancer	Fetal Stomach	stomach
24	chr11:46355400-46356000	Enhancers	Right Ventricle	heart
25	chr11:46355400-46356000	Bivalent Enhancer	Thymus	Thymus
26	chr11:46355400-46356400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:46355400-46356400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:46355400-46356600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
29	chr11:46355400-46358600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:46355400-46359600	Weak transcription	Fetal Heart	heart
31	chr11:46355600-46356000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:46355600-46356000	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr11:46355600-46356000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
34	chr11:46355600-46356000	Enhancers	Right Atrium	heart
35	chr11:46355600-46356400	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
36	chr11:46355600-46356400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr11:46355600-46356400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:46355600-46356400	Bivalent Enhancer	Brain Hippocampus Middle	brain
39	chr11:46355600-46356800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr11:46355800-46356000	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:46355800-46356000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr11:46355800-46356000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:46355800-46356000	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
44	chr11:46355800-46356000	Flanking Active TSS	Brain Angular Gyrus	brain
45	chr11:46355800-46356000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
46	chr11:46355800-46356000	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr11:46355800-46356200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr11:46355800-46356200	Flanking Active TSS	Brain Anterior Caudate	brain
49	chr11:46355800-46356200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
50	chr11:46355800-46356400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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