Variant report

Variant	rs4565870
Chromosome Location	chr11:46349869-46349870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46341667..46343231-chr11:46348758..46351326,2	MCF-7	breast:
2	chr11:46264390..46266191-chr11:46349248..46351838,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10838596	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11038866	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11038871	0.88[AMR][1000 genomes]
rs12273290	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3740973	0.83[AMR][1000 genomes]
rs7476	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554201	chr11:46281835-46422686	Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv825867	chr11:46303184-46425613	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv1797501	chr11:46315437-46402521	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv1811345	chr11:46317062-46438072	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv554202	chr11:46334239-46469900	Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv897316	chr11:46349631-46417815	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46338800-46351400	Weak transcription	Fetal Heart	heart
2	chr11:46342000-46351000	Weak transcription	Primary T cells from cord blood	blood
3	chr11:46342400-46352000	Weak transcription	Right Ventricle	heart
4	chr11:46342600-46352200	Weak transcription	Ovary	ovary
5	chr11:46342600-46353200	Weak transcription	Spleen	Spleen
6	chr11:46343200-46353800	Weak transcription	Pancreas	Pancrea
7	chr11:46343400-46351200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:46344000-46351400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:46344000-46352000	Weak transcription	Left Ventricle	heart
10	chr11:46344000-46354000	Weak transcription	Gastric	stomach
11	chr11:46344200-46351400	Weak transcription	HSMMtube	muscle
12	chr11:46344800-46351000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr11:46344800-46351600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:46345000-46351400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:46345200-46352000	Weak transcription	HSMM	muscle
16	chr11:46345200-46352200	Weak transcription	Adipose Nuclei	Adipose
17	chr11:46346200-46351000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr11:46347600-46351000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:46348400-46351000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:46348400-46351200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr11:46348400-46351200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:46348400-46351400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr11:46348600-46350600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr11:46348800-46351200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:46348800-46351200	Weak transcription	Fetal Stomach	stomach
26	chr11:46349200-46351600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:46349400-46351000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr11:46349400-46351200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr11:46349600-46350800	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr11:46349600-46351200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:46349600-46351200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:46349800-46351600	Weak transcription	Placenta	Placenta
33	chr11:46349800-46357400	Weak transcription	Hela-S3	cervix

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